File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/967cf8127e253e56aabdd1c1bc87fb/.command.err
Size
86.1 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr4_22420786-22421189.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXb52TsC/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXb52TsC/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXb52TsC/chr4_22420786-22421189.bed.gz.tbi
[2026-06-04T19:43:16.433136Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:16.437735Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:16.437748Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:16.437752Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:16.437756Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXb52TsC'
[2026-06-04T19:43:16.437760Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:16.437795Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:16.437800Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:16.437805Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:16.437809Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:16.437814Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:16.437818Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:16.437823Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:16.437827Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:16.438479Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:16.438553Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:16.445079Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:16.445748Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:16.445984Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:16.446234Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:16.446489Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.446962Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.447053Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.447125Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.447242Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.447312Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.447429Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.447497Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.447950Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.448101Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.448438Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.451018Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:16.451153Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.451343Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.451706Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.451906Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.452233Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.452440Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.452567Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.452635Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.452843Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.452916Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.453032Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.453104Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.453217Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.453281Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.453402Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.453528Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.453949Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.454018Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.454132Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.454233Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.454353Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.454417Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.454534Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.454600Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.454764Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.454825Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.455115Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.455417Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.455531Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.455595Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.455713Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.455776Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.455884Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.455946Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.456061Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.456176Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.456296Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.456386Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.456760Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.457121Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.457236Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.457300Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.457412Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.457474Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.457586Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.457650Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.457761Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.457868Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.457985Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.458047Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.458192Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.458389Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.459410Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.459543Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.459688Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.459756Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.459875Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.460035Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.460757Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.460840Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.460989Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.461072Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.463123Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.463719Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.463859Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.463940Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.464074Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.464146Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.464263Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.464347Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.464478Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.464548Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.464673Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.464866Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.465548Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.465643Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.465758Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.465827Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.465958Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.466028Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.466149Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.466217Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.466343Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.466412Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.487026Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.487950Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.488092Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.488348Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.489492Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.489782Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.489902Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.490375Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.490579Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.491139Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.491504Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.492203Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.492930Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.493904Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.494373Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.495497Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.496057Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.496735Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.498807Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:16.499633Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T19:43:16.505539Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T19:43:16.508107Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T19:43:16.510326Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T19:43:16.512701Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T19:43:16.514970Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T19:43:16.517169Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T19:43:16.519326Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T19:43:17.634941Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.635021Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.636183Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.636683Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.639902Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T19:43:17.640965Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T19:43:17.641220Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.642206Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.644987Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T19:43:17.674369Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.675526Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.678571Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T19:43:17.890148Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.891496Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.894217Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T19:43:17.923556Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.924862Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.927604Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T19:43:17.928588Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.930367Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.933142Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T19:43:18.245182Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.246927Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.250720Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T19:43:18.361844Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.363314Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.366523Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T19:43:18.478102Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.479522Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.482593Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T19:43:18.543808Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.545339Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.548237Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T19:43:18.860024Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.861188Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.864304Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T19:43:18.925222Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.926410Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.929263Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T19:43:19.090827Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.090922Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.091980Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.092515Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.096438Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T19:43:19.156828Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.157999Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.160981Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T19:43:19.222295Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.223478Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.226666Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T19:43:19.438279Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.439256Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.442428Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T19:43:19.503757Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.504913Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.507809Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T19:43:19.569032Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.569125Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.570085Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.570430Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.573533Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T19:43:19.574547Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T19:43:19.586450Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.587456Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.590079Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T19:43:19.619418Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.620467Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.623149Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T19:43:19.652548Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.653526Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.656530Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T19:43:19.669638Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.670714Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.673368Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T19:43:19.702969Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.703994Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.707024Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T19:43:19.707526Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.708456Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.711294Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T19:43:19.740378Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.741381Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.743869Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T19:43:19.805343Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.806358Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.809539Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T19:43:19.921060Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.922041Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.925666Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T19:43:20.337897Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.337976Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.338006Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.339005Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.341361Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.342229Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.343103Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T19:43:20.346424Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T19:43:20.406874Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.408013Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.411001Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T19:43:20.640022Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T19:43:20.673223Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.674369Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.677090Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T19:43:20.738691Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.740518Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.743858Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T19:43:21.206087Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.207360Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.210269Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T19:43:21.271601Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.273083Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.276609Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T19:43:21.488554Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.489764Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.493070Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T19:43:21.554234Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.555707Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.558891Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T19:43:21.571858Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.572985Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.575866Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T19:43:21.605026Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.606583Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.606967Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.608560Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.611665Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T19:43:21.612541Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T19:43:21.672950Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.674859Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.677758Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T19:43:21.739040Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.740246Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.744143Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T19:43:21.748584Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.749703Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.752714Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T19:43:21.864079Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.865223Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.868497Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T19:43:22.130056Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.131134Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.134029Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T19:43:22.144842Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T19:43:22.147503Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.148742Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.152189Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T19:43:22.181244Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.182452Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.185967Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T19:43:22.698319Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.699254Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.702979Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T19:43:22.763945Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.764859Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.768453Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T19:43:22.929700Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.930606Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.933373Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T19:43:22.995101Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.996030Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.998955Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T19:43:23.060494Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.061296Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.064348Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T19:43:23.125829Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.125925Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.126755Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.127026Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.130556Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T19:43:23.131619Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T19:43:23.159538Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.160455Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.163224Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T19:43:23.224650Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.225447Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.228866Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T19:43:23.339847Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.340591Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.343647Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T19:43:23.405107Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.405201Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.405944Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.406385Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.409415Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T19:43:23.410411Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T19:43:23.439385Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.440295Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.442371Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.442480Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.443229Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T19:43:23.443338Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.443615Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.446387Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T19:43:23.447690Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T19:43:23.475843Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.476505Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.479378Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T19:43:23.540824Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.541544Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.544332Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T19:43:24.007021Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.007741Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.011004Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T19:43:24.072256Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.072379Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.073047Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.073447Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.076301Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T19:43:24.077079Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T19:43:24.137811Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.137907Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.138550Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.140569Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.142001Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T19:43:24.143118Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T19:43:24.156642Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.157266Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.159245Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.159915Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.161119Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T19:43:24.162280Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T19:43:24.175769Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.176692Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.176916Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.178779Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.179205Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T19:43:24.181371Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T19:43:24.194647Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.194715Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.195267Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.195533Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.198364Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T19:43:24.228145Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.228222Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.228775Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.229119Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.232459Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T19:43:24.233158Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T19:43:24.241902Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T19:43:24.245194Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.245252Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.245755Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.246085Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.248882Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T19:43:24.249765Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T19:43:24.262168Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.294328Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.294425Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.609107Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.609181Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.609626Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.609863Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.612301Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.614139Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T19:43:24.615255Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.615501Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T19:43:24.617974Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T19:43:24.623279Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.623827Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.626388Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T19:43:24.656072Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.656302Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.656353Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.656381Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.674025Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.674581Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.676873Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T19:43:25.706795Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.707147Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.707313Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.707593Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.707915Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.712160Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:25.713422Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:25.714591Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:25.740350Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.740499Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.740794Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.741070Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.741451Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.744052Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:25.744477Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:25.805643Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.805747Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.805992Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.808250Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:25.838016Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.054770Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:35.327000Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:35.327000Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] 
[2026-06-04T19:43:35.327000Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:35.327069Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] 
[2026-06-04T19:43:35.327077Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:35.327085Z] [nf-38967cf8127e253e56aabdd1c1bc87fb-6b608-pl545] [597_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec