cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:156000001, elapsed 0.1s, est remaining 2.7s, peak mem 432MB, user 0.3s, sys 3.4s, output queue size 18
progress 10% @chr2:81000001, elapsed 0.3s, est remaining 2.3s, peak mem 795MB, user 0.8s, sys 6.4s, output queue size 41
progress 15% @chr2:235000001, elapsed 0.4s, est remaining 2.1s, peak mem 979MB, user 1.2s, sys 9.5s, output queue size 22
progress 20% @chr3:161000001, elapsed 0.5s, est remaining 1.9s, peak mem 1129MB, user 1.7s, sys 12.4s, output queue size 26
progress 25% @chr4:101000001, elapsed 0.6s, est remaining 1.8s, peak mem 1290MB, user 2.3s, sys 15.3s, output queue size 14
progress 30% @chr5:92000001, elapsed 0.7s, est remaining 1.7s, peak mem 1485MB, user 2.8s, sys 18.4s, output queue size 14
progress 35% @chr6:50000001, elapsed 0.8s, est remaining 1.5s, peak mem 1614MB, user 3.2s, sys 21.5s, output queue size 18
progress 40% @chr7:48000001, elapsed 0.9s, est remaining 1.4s, peak mem 1774MB, user 3.8s, sys 24.4s, output queue size 18
progress 45% @chr8:35000001, elapsed 1.1s, est remaining 1.3s, peak mem 1932MB, user 4.3s, sys 27.4s, output queue size 22
progress 50% @chr9:76000001, elapsed 1.2s, est remaining 1.2s, peak mem 2038MB, user 4.8s, sys 30.5s, output queue size 10
progress 55% @chr10:96000001, elapsed 1.3s, est remaining 1.0s, peak mem 2118MB, user 5.3s, sys 33.6s, output queue size 18
progress 60% @chr11:107000001, elapsed 1.4s, est remaining 0.9s, peak mem 2166MB, user 5.7s, sys 36.7s, output queue size 16
progress 65% @chr13:4000001, elapsed 1.5s, est remaining 0.8s, peak mem 2239MB, user 6.1s, sys 40.2s, output queue size 11
progress 70% @chr14:67000001, elapsed 1.6s, est remaining 0.7s, peak mem 2277MB, user 6.6s, sys 43.4s, output queue size 16
progress 75% @chr16:13000001, elapsed 1.8s, est remaining 0.6s, peak mem 2316MB, user 7.1s, sys 46.7s, output queue size 18
progress 80% @chr18:5000001, elapsed 1.9s, est remaining 0.5s, peak mem 2356MB, user 7.4s, sys 50.2s, output queue size 9
progress 85% @chr20:24000001, elapsed 2.0s, est remaining 0.4s, peak mem 2395MB, user 7.8s, sys 53.6s, output queue size 9
progress 90% @chrX:41000001, elapsed 2.5s, est remaining 0.3s, peak mem 2794MB, user 11.7s, sys 55.0s, output queue size 114
progress 95% @chrY:44000001, elapsed 2.6s, est remaining 0.1s, peak mem 2800MB, user 14.4s, sys 55.5s, output queue size 276
progress 100% @chr21:41000001, elapsed 5.3s, est remaining 0.0s, peak mem 2833MB, user 33.9s, sys 56.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50047053
output file size: 93248814
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.019 real
ReadQualCal::delayed_init: 1 calls 0.008 user 0.001 sys 0.027 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.923 user 7.003 sys 9.581 real
done: 1 calls 0.368 user 0.272 sys 0.643 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.005 user 0.000 sys 5.308 real
fetch: 3219323 calls 0.327 user 6.414 sys 7.812 real
fetch_reads: 3219322 calls 0.462 user 6.633 sys 7.911 real
fetch_ref: 13004 calls 0.029 user 0.018 sys 0.057 real
fetch_vcf: 13004 calls 1.717 user 0.128 sys 1.919 real
idle: 2344 calls 4.314 user 0.420 sys 91.980 real
init: 1 calls 0.012 user 0.001 sys 0.034 real
update: 13229 calls 10.325 user 1.211 sys 12.212 real
write: 3219323 calls 12.157 user 6.764 sys 18.751 real
overall: 2971475968 mem 45.277 user 57.467 sys 6.636 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.030 user 0.000 sys 0.028 real
done: 1 calls 0.040 user 0.010 sys 0.059 real
idle: 61 calls 0.002 user 0.000 sys 31.315 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 82075648 mem 0.066 user 0.039 sys 1.053 real