File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/408846cb6c5bd95c5f74867333f0d4/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8ino0m7w because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 19:48:31,565 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 19:48:32,944 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 19:48:33,245 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 19:48:35,702 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 19:48:36,001 - cnv_pipe.batch.run_model - INFO - Processing cluster 1078 with 113 probes
2026-06-04 19:48:37,018 - cnv_pipe.batch.run_model.cluster1078 - INFO - Child process started for cluster 1078 with 113 probes
2026-06-04 19:49:31,793 - cnv_pipe.batch.run_model.cluster1078 - INFO - Child process finished cluster 1078. Wrote cluster_1078_samples.csv and cluster_1078_params.csv
2026-06-04 19:49:31,794 - cnv_pipe.batch.run_model - INFO - Cluster 1078 finished in 55.79 seconds. Status: SUCCESS