.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr6_138229684-138229952.bed)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/fabd53a8319e20180bddfc208c7d8a/.command.log
Size: 102.5 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr6_138229684-138229952.bed)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/fabd53a8319e20180bddfc208c7d8a/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/fabd53a8319e20180bddfc208c7d8a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/d477fe8b5b7c55927132efa2aa1068/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/d477fe8b5b7c55927132efa2aa1068/Sig_18_Blood.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXfiF1X5/chr6_138229684-138229952.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXfiF1X5/chr6_138229684-138229952.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXfiF1X5/chr6_138229684-138229952.bed.gz.tbi
[2026-06-04T19:43:25.518465Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:25.539316Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:25.539357Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:25.539364Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:25.539372Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXfiF1X5'
[2026-06-04T19:43:25.539378Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:25.539385Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:25.539392Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:25.539397Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:25.539404Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:25.539410Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:25.539415Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:25.539422Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:25.539427Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:25.539871Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:25.539958Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:25.545835Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:25.546601Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:25.546849Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:25.547745Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:25.548158Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.548916Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.549029Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.549120Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.549273Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.549476Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.550219Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.550342Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.550707Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.552098Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.552662Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.555486Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:25.555828Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.556125Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.556290Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.556376Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.556521Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.556604Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.556749Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.556828Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.557043Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.557144Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.557539Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.558156Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.558435Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.558534Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.558745Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.558899Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.559474Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.559896Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.560087Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.560257Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.560452Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.560552Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.560722Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.560815Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.561219Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.561759Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.561950Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.562060Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.562229Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.562324Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.562495Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.562587Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.562770Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.563235Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.563893Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.564000Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.564284Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.564388Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.564551Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.564644Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.565024Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.565609Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.565795Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.565889Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.566054Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.566149Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.566311Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.566410Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.566658Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.567483Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.567705Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.567796Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.567943Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.568029Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.568174Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.568254Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.568462Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.568747Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.569555Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.569639Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.569779Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.569859Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.571577Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.572351Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.572519Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.572605Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.572747Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.572827Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.573065Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.573160Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.573315Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.573698Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.574773Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.574933Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.575176Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.575294Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.575471Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.575569Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.575950Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.576948Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.577139Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.577221Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.577369Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.577451Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.577607Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.577688Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.577839Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.578044Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.578688Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.579575Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.580689Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.580770Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.580911Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.581000Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.581139Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.581217Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.581360Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.581439Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.586119Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.586834Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.587004Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.588504Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.589416Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.589838Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.590439Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.591510Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.591872Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.592464Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.594397Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.596156Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.597627Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.607949Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T19:43:25.611943Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0010] Task initiated on local node
[2026-06-04T19:43:25.615369Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0005] Task initiated on local node
[2026-06-04T19:43:25.619000Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T19:43:25.622753Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0008] Task initiated on local node
[2026-06-04T19:43:25.625961Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T19:43:25.633228Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0006] Task initiated on local node
[2026-06-04T19:43:25.644978Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.645217Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.645330Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.645647Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.645738Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.645873Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.645952Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.646140Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.646252Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:25.646322Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:25.765964Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.766038Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.767288Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.767585Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.771351Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0005] Task initiated on local node
[2026-06-04T19:43:26.383459Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.384960Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.387968Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T19:43:26.448848Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.450162Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.453458Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0011] Task initiated on local node
[2026-06-04T19:43:26.764822Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.766255Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.769834Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0013] Task initiated on local node
[2026-06-04T19:43:26.880827Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.882221Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.885822Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0003] Task initiated on local node
[2026-06-04T19:43:26.916835Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T19:43:26.946486Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.947819Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.951129Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-04T19:43:27.062260Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.064018Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.067262Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T19:43:27.178512Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.180143Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.183319Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T19:43:27.266293Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0001] Task initiated on local node
[2026-06-04T19:43:27.294596Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.296087Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.299238Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0002] Task initiated on local node
[2026-06-04T19:43:27.360599Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.360716Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.362218Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.362586Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.366645Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0012] Task initiated on local node
[2026-06-04T19:43:27.367296Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-04T19:43:27.476875Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.478258Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.481037Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T19:43:27.542302Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.543575Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.546025Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T19:43:27.607520Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.607604Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.608772Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.609206Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.612311Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0011] Task initiated on local node
[2026-06-04T19:43:27.613033Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0004] Task initiated on local node
[2026-06-04T19:43:27.673522Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.674714Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.677256Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0008] Task initiated on local node
[2026-06-04T19:43:27.706468Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.707604Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.709965Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T19:43:27.771529Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.772713Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.775373Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T19:43:27.836690Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.837868Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.840413Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0006] Task initiated on local node
[2026-06-04T19:43:28.502967Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.504260Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.506902Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T19:43:28.618321Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.619704Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.622478Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0007] Task initiated on local node
[2026-06-04T19:43:28.884355Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.885739Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.888938Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T19:43:28.949852Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.949935Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.951075Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.951554Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.954900Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0011] Task initiated on local node
[2026-06-04T19:43:28.955931Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T19:43:29.015861Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.015955Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.017178Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.017560Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.020454Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0003] Task initiated on local node
[2026-06-04T19:43:29.024338Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0005] Task initiated on local node
[2026-06-04T19:43:29.053691Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.053782Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.055315Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.055843Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.059151Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0004] Task initiated on local node
[2026-06-04T19:43:29.060308Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T19:43:29.120175Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.120267Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.121475Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.121767Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.125204Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T19:43:29.126283Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0008] Task initiated on local node
[2026-06-04T19:43:29.236416Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.238015Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.240388Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T19:43:29.269941Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.271280Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.273706Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T19:43:29.335311Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.336747Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.339936Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0000] Task initiated on local node
[2026-06-04T19:43:29.369014Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.369098Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.370382Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.370779Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.373792Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0007] Task initiated on local node
[2026-06-04T19:43:29.374970Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0012] Task initiated on local node
[2026-06-04T19:43:29.402780Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.404145Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.404710Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.406283Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.408660Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-04T19:43:29.409907Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0010] Task initiated on local node
[2026-06-04T19:43:29.438147Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.438202Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.439253Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.439461Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.442376Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T19:43:29.443104Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0009] Task initiated on local node
[2026-06-04T19:43:29.704048Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.705377Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.708424Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0002] Task initiated on local node
[2026-06-04T19:43:29.709253Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.710463Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.712993Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T19:43:29.774425Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.774517Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.775839Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.776233Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.779481Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-04T19:43:29.780491Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T19:43:29.840592Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.841941Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.844939Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T19:43:29.845991Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.847281Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.849961Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0011] Task initiated on local node
[2026-06-04T19:43:29.911288Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.912453Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.915363Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T19:43:29.976407Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.977546Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.980558Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0004] Task initiated on local node
[2026-06-04T19:43:30.342297Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.343566Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.346674Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0000] Task initiated on local node
[2026-06-04T19:43:30.457927Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.459226Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.461883Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T19:43:30.491271Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.492824Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.493212Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.495971Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.496563Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T19:43:30.498524Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0006] Task initiated on local node
[2026-06-04T19:43:30.528059Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.529018Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.531412Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0001] Task initiated on local node
[2026-06-04T19:43:30.532561Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.533630Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.536635Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T19:43:30.565561Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.566584Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.569040Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T19:43:30.680723Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.681854Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.684869Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T19:43:30.745951Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.747095Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.749733Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0001] Task initiated on local node
[2026-06-04T19:43:30.762973Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.763949Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.766921Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0000] Task initiated on local node
[2026-06-04T19:43:30.828076Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.829137Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.832371Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T19:43:30.893319Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.894431Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.897202Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T19:43:30.902044Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.903027Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.905588Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0003] Task initiated on local node
[2026-06-04T19:43:30.966986Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.968337Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.968615Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.971498Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.972084Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T19:43:30.974141Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T19:43:31.035576Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.036564Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.039463Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0005] Task initiated on local node
[2026-06-04T19:43:31.040540Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.041497Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.044426Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T19:43:31.105589Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.106543Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.109605Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0009] Task initiated on local node
[2026-06-04T19:43:31.170664Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.171636Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.174471Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T19:43:31.235595Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.236526Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.239516Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0007] Task initiated on local node
[2026-06-04T19:43:31.651102Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.652052Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.655094Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0002] Task initiated on local node
[2026-06-04T19:43:31.766388Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.767323Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.770481Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T19:43:31.831207Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.832064Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.835071Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:32.296729Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.297785Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.300893Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0008] Task initiated on local node
[2026-06-04T19:43:32.361889Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.363467Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.363743Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.365165Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.368382Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T19:43:32.369380Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0006] Task initiated on local node
[2026-06-04T19:43:32.398662Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.399668Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.402287Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T19:43:32.403510Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.404494Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.407014Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0001] Task initiated on local node
[2026-06-04T19:43:32.436410Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.437393Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.440194Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0012] Task initiated on local node
[2026-06-04T19:43:32.453229Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.453306Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.454090Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.454342Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.457148Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T19:43:32.458183Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0000] Task initiated on local node
[2026-06-04T19:43:32.518306Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.518375Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.518407Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.519183Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.519478Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.519698Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.523697Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0007] Task initiated on local node
[2026-06-04T19:43:32.524985Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T19:43:32.525998Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T19:43:32.584360Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.585294Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.588355Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T19:43:32.593231Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.594112Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.596931Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T19:43:32.657968Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.658039Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.658807Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.659021Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.661936Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T19:43:32.662717Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T19:43:32.667553Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.668252Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.670998Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T19:43:32.700291Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.701302Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.701759Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.703357Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.705258Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.706357Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0010] Task initiated on local node
[2026-06-04T19:43:32.707165Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.710232Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T19:43:32.711151Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0004] Task initiated on local node
[2026-06-04T19:43:32.771368Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.772150Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.774983Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T19:43:32.775769Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.776493Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.779313Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T19:43:32.808360Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.809070Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.811908Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T19:43:32.824803Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.825517Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.828217Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0013] Task initiated on local node
[2026-06-04T19:43:32.841259Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.841937Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.844613Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T19:43:32.857685Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.858352Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.861155Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0009] Task initiated on local node
[2026-06-04T19:43:32.861822Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.862438Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.865089Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0009] Task initiated on local node
[2026-06-04T19:43:32.878131Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.878810Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.882029Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T19:43:32.910868Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.910919Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.911512Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.914266Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0003] Task initiated on local node
[2026-06-04T19:43:32.943479Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.945315Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.945944Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.948681Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T19:43:33.009964Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.424849Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.425550Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.428507Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0002] Task initiated on local node
[2026-06-04T19:43:33.489654Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.704029Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.704642Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.707494Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:33.768461Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.233104Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.233736Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.236474Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0012] Task initiated on local node
[2026-06-04T19:43:34.265758Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.380028Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.380722Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.383369Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0010] Task initiated on local node
[2026-06-04T19:43:34.396447Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.397083Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.400647Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T19:43:34.429138Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.429194Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.429519Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.429644Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.429920Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.430184Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.435505Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:34.436643Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:34.437519Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:34.494356Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.494434Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.494461Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.494740Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.495149Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.498453Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:34.527340Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:34.527931Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.528119Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.528334Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:34.530877Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:34.560392Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:36.177356Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:44.427507Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:44.427507Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] 
[2026-06-04T19:43:44.427507Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:44.427629Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] 
[2026-06-04T19:43:44.427636Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:44.427646Z] [nf-f4fabd53a8319e20180bddfc208c7d8a-ae0e2-r6x56] [757_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec