File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/70761098c88687ac46ca450c985845/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXV8PxYs/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXV8PxYs/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXV8PxYs/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T19:43:20.067682Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:20.068464Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:20.068487Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:20.068495Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:20.068503Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXV8PxYs'
[2026-06-04T19:43:20.068511Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:20.068520Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:20.068528Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:20.068539Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] [RunParameters] memMb: 386571
[2026-06-04T19:43:20.068546Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:20.068553Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:20.068563Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:20.068573Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:20.068584Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:20.069161Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:20.069246Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:20.079448Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:20.080159Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:20.080600Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:20.080850Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:20.081187Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.081758Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.081920Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.082050Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.082502Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.082981Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.083346Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.083612Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.084261Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.085195Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.085580Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.087707Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.088429Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.088813Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:20.089452Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.090193Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.090689Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.091330Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.092106Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.092275Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.092630Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.092762Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.092982Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.093114Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.094193Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.094340Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.094571Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.094698Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.094912Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.095045Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.095266Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.095526Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.097006Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.097205Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.097461Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.097594Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.097827Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.098085Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.099255Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.099443Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.100633Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.101712Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.101945Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.102075Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.103469Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.104879Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.105379Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.105559Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.105831Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.107417Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.107709Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.107857Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.108090Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.108222Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.108447Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.109918Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.110214Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.110356Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.110579Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.110714Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.110936Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.111069Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.112834Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.112994Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.113226Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.113369Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.138034Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.138236Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.138394Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.138688Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.138834Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.139002Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.139133Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.139346Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.141535Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.141648Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:20.145945Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.147561Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.148053Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.148707Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.149500Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.150185Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.150845Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.152183Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.152960Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.155859Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T19:43:20.160003Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T19:43:20.164312Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T19:43:20.166684Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T19:43:20.168345Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T19:43:20.170212Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T19:43:20.171919Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T19:43:20.173462Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T19:43:20.321267Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.323186Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.328197Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T19:43:22.292666Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.294746Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.298609Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T19:43:22.760952Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.762205Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.765981Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T19:43:22.770554Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.771825Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.774983Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T19:43:22.836140Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.837557Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.838172Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.839746Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.843563Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T19:43:22.844662Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T19:43:22.904676Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.905872Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.909285Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T19:43:22.970541Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.971803Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.975626Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T19:43:23.086810Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.088087Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.092006Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T19:43:23.253123Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.254423Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.258105Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T19:43:23.319014Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.320304Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.324068Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T19:43:23.435086Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.436327Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.440409Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T19:43:23.500786Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.502831Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.506699Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T19:43:23.718033Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.719229Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.722907Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T19:43:23.783910Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.785161Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.788795Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T19:43:23.849860Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.851083Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.854667Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T19:43:24.767916Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.769725Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.773276Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T19:43:24.834299Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.835424Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.838925Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T19:43:25.100597Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.101674Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.105183Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T19:43:25.166249Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.167358Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.170789Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T19:43:25.231912Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.232929Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.236751Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T19:43:25.297557Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.298605Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.301872Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T19:43:25.363092Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.364235Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.368258Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T19:43:25.880538Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.881549Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.885110Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T19:43:25.946057Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.947667Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.952420Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T19:43:26.062590Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.063600Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.067135Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T19:43:26.128210Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.129137Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.132704Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T19:43:26.243954Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.244895Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.248307Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T19:43:26.309531Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.310452Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.313376Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T19:43:26.374627Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.376521Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.381164Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T19:43:26.491686Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.493086Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.496519Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T19:43:26.607777Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.609217Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.612750Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T19:43:26.673582Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.675050Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.678975Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T19:43:26.990292Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.991714Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.995418Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T19:43:27.056185Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.057273Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.060599Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T19:43:27.121706Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.122658Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.126066Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T19:43:27.139024Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.139945Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.143225Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T19:43:27.172486Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.173332Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.176406Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T19:43:27.237706Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.237836Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.238665Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.239010Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.242308Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T19:43:27.243224Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T19:43:27.303730Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.303835Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.304702Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.304950Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.308519Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T19:43:27.309474Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T19:43:27.369671Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.370496Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.374776Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T19:43:27.403180Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.404151Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.407428Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T19:43:27.468668Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.469543Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.473183Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T19:43:27.935354Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.936548Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.939996Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T19:43:28.000886Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.002174Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.006378Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T19:43:28.818008Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.819226Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.823319Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T19:43:28.883939Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.885120Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.888764Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T19:43:29.200184Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.201327Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.204651Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T19:43:29.233495Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.234692Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.238116Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T19:43:29.242637Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.275150Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.640352Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.641453Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.644807Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T19:43:29.705857Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.870573Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.871726Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:29.875327Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T19:43:29.936051Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.551834Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.552834Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.555970Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T19:43:30.617103Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.982120Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.983072Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.986809Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T19:43:31.047444Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.016585Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.017272Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.020248Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T19:43:33.081580Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.396796Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.397512Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.400389Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T19:43:33.461770Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.462174Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.462368Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.462642Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.463099Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.467826Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:33.470672Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:33.496844Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:33.528214Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.528295Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.528337Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.528647Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.529004Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.533093Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:33.534037Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:33.593966Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.594057Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.594327Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.597212Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:33.658549Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.073949Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:53.188167Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:53.188167Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] 
[2026-06-04T19:43:53.188167Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:53.188252Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] 
[2026-06-04T19:43:53.188264Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:53.188291Z] [nf-5070761098c88687ac46ca450c985845-57451-rdzgn] [733_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec