File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/e77d4c624e2a99270a9f6d04655b53/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-04T19:43:20.517761Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:20.519311Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:20.519338Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:20.519348Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:20.519356Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXDc9guR'
[2026-06-04T19:43:20.519364Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:20.519374Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:20.519400Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:20.519408Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] [RunParameters] memMb: 386571
[2026-06-04T19:43:20.519417Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:20.519425Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:20.519433Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:20.519441Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:20.519449Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:20.519913Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:20.519992Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:20.530549Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:20.531479Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:20.531644Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:20.531890Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:20.532189Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.532723Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.532917Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.533342Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.533942Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.534221Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.534787Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.535436Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.535668Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.535967Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.536157Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.538479Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.539228Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.539662Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:20.539718Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.539861Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.540197Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.540702Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.540939Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.541090Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.541501Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.541664Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.542259Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.542776Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.543015Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.543143Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.543370Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.543499Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.543718Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.544186Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.544862Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.545012Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.545243Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.545370Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.545592Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.545852Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.546672Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.546803Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.547016Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.547135Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.547348Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.547484Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.548163Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.548903Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.550008Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.550751Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.550991Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.551292Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.551539Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.551687Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.552341Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.553059Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.553308Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.553442Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.553660Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.553785Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.554070Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.554332Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.555831Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.555982Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.556203Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.556331Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.556549Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.556675Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.557179Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.558325Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.558581Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.558711Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.584127Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.589096Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.590221Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.590429Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.590785Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.591462Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.592273Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.592428Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.595682Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.596141Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.597210Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.597473Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.598069Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.598624Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.599436Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.600398Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.600838Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.602271Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:20.611902Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T19:43:20.614261Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T19:43:20.615356Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:20.615808Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T19:43:20.626000Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T19:43:20.626333Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T19:43:20.626491Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T19:43:21.635472Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.636753Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.640601Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:21.751717Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.753125Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.756888Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:21.817680Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.818969Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.822832Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:23.187043Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.189767Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.193282Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T19:43:24.010409Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:24.056061Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.056197Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.057885Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.058456Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.063001Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T19:43:24.063967Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T19:43:24.172795Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.174608Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.178242Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T19:43:24.534852Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T19:43:24.539820Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.539964Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.541790Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.542270Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.546154Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:24.547254Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:24.607060Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.609161Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.612484Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T19:43:24.723954Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.726053Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.729648Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:24.840751Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.842893Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.846391Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T19:43:24.907449Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.909243Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:24.912989Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T19:43:25.475163Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.477039Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.480536Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T19:43:25.541542Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.543255Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.546607Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:26.108966Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.110656Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.114118Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:26.225260Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.226376Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.229822Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T19:43:26.290897Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.291979Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.295826Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T19:43:26.456931Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.458631Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:26.462769Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T19:43:27.076044Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.077768Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.081168Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T19:43:27.292617Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.294235Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.297577Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T19:43:27.408821Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.410375Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.413610Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:27.474705Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.476285Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.479532Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:27.590726Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.592298Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.595551Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T19:43:27.608391Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.609868Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.613027Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T19:43:27.642119Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.643940Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.647041Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:27.708196Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.709799Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.713177Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T19:43:28.124859Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.125879Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.129271Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T19:43:28.190216Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.191649Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.194701Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T19:43:28.255832Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.257235Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.260425Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:28.321509Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.322926Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.326077Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:28.387254Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.388912Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.392470Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:28.503429Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.505005Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.508264Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T19:43:28.569242Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.570631Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:28.574120Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:30.690571Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.690685Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.691486Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.691793Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.695337Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T19:43:30.696212Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T19:43:30.756264Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.756397Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.757209Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.757648Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.760873Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T19:43:30.761966Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T19:43:30.822315Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.822427Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.823243Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.823607Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:30.828110Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T19:43:30.828738Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T19:43:31.038578Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.038670Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.039489Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.039792Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.043211Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T19:43:31.044442Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T19:43:31.072521Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.073333Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.076232Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T19:43:31.081198Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.081289Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.082000Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.082310Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.085691Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T19:43:31.086426Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T19:43:31.114513Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.115307Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.118408Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:31.123149Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.123916Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.124284Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.126690Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.127562Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T19:43:31.129910Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:31.159042Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.159149Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.159814Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.160118Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.163423Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T19:43:31.164130Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.164796Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:31.165164Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.167928Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:31.229480Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.229587Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.229650Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.230327Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.230653Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.231005Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.234499Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:31.236012Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T19:43:31.237027Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T19:43:31.295968Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.296063Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.296119Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.360544Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.361203Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.364236Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:31.425267Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.457559Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.458194Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:31.460875Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:31.522352Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.539463Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.540181Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:32.543102Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T19:43:32.604523Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.521441Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.522077Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:33.524874Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:33.586102Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.054673Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.055543Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.058484Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T19:43:35.119658Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.120054Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.120243Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.120593Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.121097Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.125621Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:35.127128Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:35.128355Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:35.185296Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.185366Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.185404Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.185712Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.185994Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.188881Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:35.190057Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:35.250549Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.250709Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.251134Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:35.253782Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:35.315395Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:39.540914Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:53.638768Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:53.638768Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] 
[2026-06-04T19:43:53.638768Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:53.638834Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] 
[2026-06-04T19:43:53.638844Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:53.638870Z] [nf-24e77d4c624e2a99270a9f6d04655b53-3407f-st8lp] [718_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec