File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/490f336534a623d14f1c700bb2d90b/.command.log
Size
61.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/490f336534a623d14f1c700bb2d90b/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/6c011b6e3fa9310df1694551efff8c/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/6c011b6e3fa9310df1694551efff8c/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/490f336534a623d14f1c700bb2d90b/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T19:43:18.230578Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:18.231564Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:18.231578Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:18.231582Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:18.231586Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXFv8aB6'
[2026-06-04T19:43:18.231590Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:18.231596Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:18.231600Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:18.231603Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:18.231607Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:18.231611Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:18.231615Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:18.231618Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:18.231622Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:18.232523Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:18.232638Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:18.238751Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:18.239429Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:18.239608Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:18.239864Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:18.240197Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.240903Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.240998Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.241073Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.241209Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.241290Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.241745Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.241936Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.242051Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.242201Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.242287Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.242966Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.243383Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.245177Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.245522Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:18.245758Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.246083Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.246163Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.246288Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.246365Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.246555Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.246632Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.246757Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.246835Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.246947Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.247034Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.247816Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.248165Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.248291Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.248400Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.248520Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.248590Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.248738Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.248810Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.248920Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.248985Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.249093Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.249274Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.249770Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.249833Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.249940Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.250000Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.250118Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.250182Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.250311Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.250375Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.250486Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.250546Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.250718Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.250929Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.251515Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.251580Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.251687Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.251748Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.251856Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.251915Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.252022Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.252105Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.252215Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.252280Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.252388Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.252448Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.252621Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.252877Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.270667Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.270877Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.271006Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.271359Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.272228Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.272808Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.272964Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.273118Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.273423Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.273925Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.274317Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.276524Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.277081Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.277346Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:18.277906Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.278443Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:18.279056Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.279906Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.280865Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.286019Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T19:43:18.288154Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T19:43:18.291918Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T19:43:18.295082Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T19:43:18.298790Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T19:43:18.299899Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T19:43:18.304161Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T19:43:18.305407Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T19:43:18.467309Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.468100Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.472155Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T19:43:18.783238Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.784100Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.787168Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T19:43:18.800380Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.801960Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.805425Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T19:43:18.866062Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.866162Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.867105Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.867408Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.870882Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T19:43:18.871784Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T19:43:19.132216Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.133149Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.136587Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T19:43:19.247658Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.248782Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.251731Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T19:43:19.312852Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.313676Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.316621Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T19:43:19.329386Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.330203Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.332944Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T19:43:19.362092Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.362877Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.365856Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T19:43:19.477224Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.478377Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.481431Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T19:43:19.743053Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.744160Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.747107Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T19:43:19.760029Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.761041Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.764156Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T19:43:19.875499Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.876626Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.879510Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T19:43:19.940850Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.942274Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.945393Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T19:43:20.006671Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.006769Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.007701Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.008059Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.010914Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T19:43:20.012137Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T19:43:20.040383Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.041572Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.041953Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.043194Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.045816Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T19:43:20.046801Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T19:43:20.075337Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.076404Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.076686Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.079045Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.079555Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T19:43:20.081984Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T19:43:20.111314Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.112283Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.115292Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T19:43:20.144668Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.145688Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.148375Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T19:43:20.360065Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.360886Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.363492Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T19:43:20.425023Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.425884Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.429017Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:20.490256Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.490422Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.491313Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.491829Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.494968Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T19:43:20.495872Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T19:43:20.556292Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.557452Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.560483Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T19:43:20.621980Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.622856Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.625657Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T19:43:20.638911Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.639854Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.642647Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T19:43:20.672055Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.672181Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.672997Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.673395Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.676841Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T19:43:20.677734Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T19:43:20.738107Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.739309Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.742088Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T19:43:20.771444Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.771552Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.772360Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.772784Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.775872Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T19:43:20.806676Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T19:43:20.838088Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.838180Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.839147Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.839635Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.843382Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T19:43:20.844370Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T19:43:20.904606Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.905330Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.908214Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T19:43:20.969315Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.970063Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.973195Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T19:43:20.986074Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.986705Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.989866Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T19:43:21.018784Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.019487Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.021532Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.022272Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.022652Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T19:43:21.025800Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T19:43:21.054619Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.055254Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.058035Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:21.087195Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.087275Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.087847Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.088134Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.091375Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T19:43:21.092324Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T19:43:21.120129Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.120780Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.123937Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T19:43:21.153220Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.154256Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.157042Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T19:43:21.157960Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.158692Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.161262Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T19:43:21.222901Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.223008Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.223892Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.226793Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T19:43:21.288202Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.288393Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.289135Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.291860Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T19:43:21.353438Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.768583Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.769198Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.772407Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T19:43:21.801547Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.016456Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.017116Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.020225Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T19:43:22.049483Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.364369Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.364985Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.367584Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T19:43:22.396938Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.429090Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.429668Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.432908Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T19:43:22.494073Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.009337Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.010035Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.012680Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T19:43:23.074375Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.074809Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.075072Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.075451Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.075979Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.080445Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:23.081764Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:23.082736Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:23.140923Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.141022Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.141053Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.141364Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.141788Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.145053Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:23.145889Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:23.206497Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.206602Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.206941Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.210085Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:23.239063Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.954751Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:28.777778Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:28.777778Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] 
[2026-06-04T19:43:28.777778Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:28.777846Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] 
[2026-06-04T19:43:28.777854Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:28.777861Z] [nf-4d490f336534a623d14f1c700bb2d90b-f8bb9-v9nwn] [691_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec