File Info

Filename
negative_somatic_control_1.tnseq.orientation_data.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/bf6cfdbbfb9f5eec8e32276ba4e2cf/negative_somatic_control_1.tnseq.orientation_data.tsv
Size
8.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2 (negative_somatic_control_1)
Attempt

Content

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#<METADATA>SAMPLE=HCC1395_BL
context rev_comp f1r2_a f1r2_c f1r2_g f1r2_t f2r1_a f2r1_c f2r1_g f2r1_t hom_ref germline_het somatic_het hom_var num_examples num_alt_examples
AAA TTT 0 2.72158e-06 4.61258e-06 2.50791e-06 0 1.24864e-05 4.54669e-05 2.89598e-06 0.999179 0.000139712 0.000533319 7.76853e-05 39903 693
AAC GTT 0 5.71959e-06 0.000143816 5.34639e-06 0 5.50377e-06 0.00015286 5.35249e-06 0.999034 0.000106992 0.000268425 0.0002724 18720 383
AAG CTT 0 3.83646e-06 0.000185399 3.70039e-06 0 1.65438e-05 0.000166523 4.44689e-06 0.998547 0.000163322 0.000577626 0.000331143 27450 699
AAT ATT 0 4.62003e-06 0.000115491 4.22541e-06 0 4.57688e-06 1.04185e-05 4.23765e-06 0.999133 0.000130456 0.000336657 0.000256655 23706 460
ACA TGT 0.00103239 0 3.90118e-06 7.04341e-06 0.00232448 0 1.41752e-05 2.24749e-05 0.995638 8.08148e-05 0.000760449 0.000116004 26716 1203
ACC GGT 0.000583727 0 5.35234e-06 5.39866e-05 0.00123645 0 5.9926e-06 2.04736e-05 0.996495 0.000504126 0.000891858 0.000203481 20146 799
ACG CGT 0.0012727 0 1.16334e-05 6.20922e-05 0.00225877 0 1.32567e-05 0.000924772 0.988617 0.00401798 0.00143045 0.00139164 8668 617
ACT AGT 0.000928609 0 5.13994e-06 1.55928e-05 0.00178811 0 5.28653e-06 1.30194e-05 0.996154 0.000278366 0.000458344 0.000353934 20059 830
AGA TCT 2.54832e-05 4.18561e-06 0 0.000505015 5.62352e-06 3.46753e-06 0 0.00088841 0.997366 0.000126093 0.000701556 0.000374511 29448 916
AGC GCT 4.40469e-05 3.85578e-06 0 0.00215576 4.74358e-05 5.93645e-06 0 0.00180631 0.995056 4.52478e-05 0.000592878 0.000242823 26462 1270
AGG CCT 1.31586e-05 4.33919e-06 0 0.000594781 3.69122e-05 3.39831e-06 0 0.000720797 0.997591 0.00020699 0.000463994 0.000364376 30447 1219
AGT ACT 1.30194e-05 5.28653e-06 0 0.00178811 1.55928e-05 5.13994e-06 0 0.000928609 0.996154 0.000278366 0.000458344 0.000353934 20059 830
ATA TAT 5.67345e-06 2.13695e-05 6.20975e-06 0 5.6665e-06 6.25512e-05 0.000134189 0 0.998529 0.000750141 0.0002556 0.000229684 17701 418
ATC GAT 6.06498e-06 4.34068e-05 4.61267e-05 0 5.93699e-06 6.75434e-05 6.39436e-06 0 0.998461 8.13976e-05 0.000742851 0.000539735 16859 390
ATG CAT 9.33969e-06 1.49268e-05 6.21297e-06 0 5.72028e-06 5.12084e-06 4.79062e-06 0 0.99733 0.000389015 0.00131129 0.000923777 22839 568
ATT AAT 4.23765e-06 1.04185e-05 4.57688e-06 0 4.22541e-06 0.000115491 4.62003e-06 0 0.999133 0.000130456 0.000336657 0.000256655 23706 460
CAA TTG 0 4.68662e-06 7.60537e-06 4.44421e-06 0 5.2973e-06 5.48697e-06 5.9829e-06 0.999093 0.000444363 0.000202463 0.000226308 22534 470
CAC GTG 0 8.19293e-06 1.03894e-05 4.62166e-06 0 4.53265e-05 5.50473e-06 4.40954e-06 0.997233 0.000602193 0.0012727 0.000813475 25730 705
CAG CTG 0 2.80347e-06 0.000100251 2.73079e-06 0 2.954e-06 0.00012283 3.76246e-06 0.997816 0.000885427 0.000360987 0.000702513 38504 1243
CAT ATG 0 4.79062e-06 5.12084e-06 5.72028e-06 0 6.21297e-06 1.49268e-05 9.33969e-06 0.99733 0.000389015 0.00131129 0.000923777 22839 568
CCA TGG 0.00108041 0 3.33319e-06 5.86728e-05 0.00135142 0 4.99104e-06 3.62023e-05 0.996949 0.000257959 0.000124486 0.000133292 30772 1274
CCC GGG 0.000191318 0 3.45352e-06 6.12738e-06 0.000340576 0 3.72368e-06 4.27286e-06 0.99818 0.00050517 0.000427402 0.000337641 29910 939
CCG CGG 0.00154238 0 1.36615e-05 0.000308045 0.00131028 0 9.31661e-06 0.000290986 0.990868 0.00226977 0.00166229 0.00172482 13389 817
CCT AGG 0.000720797 0 3.39831e-06 3.69122e-05 0.000594781 0 4.33919e-06 1.31586e-05 0.997591 0.00020699 0.000463994 0.000364376 30447 1219
CGA TCG 0.000343913 2.33737e-05 0 0.000992222 3.94247e-05 1.48434e-05 0 0.00134487 0.991612 0.00250341 0.00172621 0.00140017 7197 345
CGC GCG 0.000808573 8.66734e-06 0 0.00354533 0.000191457 9.07109e-06 0 0.00108236 0.987636 0.00257561 0.00249617 0.00164701 11590 803
CGG CCG 0.000290986 9.31661e-06 0 0.00131028 0.000308045 1.36615e-05 0 0.00154238 0.990868 0.00226977 0.00166229 0.00172482 13389 817
CGT ACG 0.000924772 1.32567e-05 0 0.00225877 6.20922e-05 1.16334e-05 0 0.0012727 0.988617 0.00401798 0.00143045 0.00139164 8668 617
CTA TAG 3.3818e-05 0.000322906 8.66466e-06 0 7.95629e-06 0.000109463 8.58233e-06 0 0.998075 0.00013605 0.000813713 0.000484111 12595 357
CTC GAG 3.91753e-06 0.000187527 3.83671e-06 0 3.61279e-06 0.000226105 3.78136e-06 0 0.998547 8.00053e-05 0.000654919 0.000289434 27877 884
CTG CAG 3.76246e-06 0.00012283 2.954e-06 0 2.73079e-06 0.000100251 2.80347e-06 0 0.997816 0.000885427 0.000360987 0.000702513 38504 1243
CTT AAG 4.44689e-06 0.000166523 1.65438e-05 0 3.70039e-06 0.000185399 3.83646e-06 0 0.998547 0.000163322 0.000577626 0.000331143 27450 699
GAA TTC 0 3.87978e-06 5.85349e-05 3.71179e-06 0 3.85678e-06 4.21658e-05 3.71544e-06 0.99927 0.000146035 0.000353727 0.000114797 27000 573
GAC GTC 0 6.29044e-06 4.32964e-05 5.68429e-06 0 2.89525e-05 7.07693e-05 7.48273e-06 0.99853 6.2559e-05 0.000784556 0.000460272 17596 454
GAG CTC 0 3.78136e-06 0.000226105 3.61279e-06 0 3.83671e-06 0.000187527 3.91753e-06 0.998547 8.00053e-05 0.000654919 0.000289434 27877 884
GAT ATC 0 6.39436e-06 6.75434e-05 5.93699e-06 0 4.61267e-05 4.34068e-05 6.06498e-06 0.998461 8.13976e-05 0.000742851 0.000539735 16859 390
GCA TGC 0.00221729 0 4.82791e-06 7.65612e-05 0.00299899 0 3.8321e-06 0.000388041 0.993473 0.000135733 0.000546142 0.000155497 26359 1451
GCC GGC 0.00238432 0 4.36316e-06 0.000110359 0.00173261 0 4.10328e-06 0.000238217 0.994614 5.98911e-05 0.000594399 0.000257581 27563 1313
GCG CGC 0.00108236 0 9.07109e-06 0.000191457 0.00354533 0 8.66734e-06 0.000808573 0.987636 0.00257561 0.00249617 0.00164701 11590 803
GCT AGC 0.00180631 0 5.93645e-06 4.74358e-05 0.00215576 0 3.85578e-06 4.40469e-05 0.995056 4.52478e-05 0.000592878 0.000242823 26462 1270
GGA TCC 4.86628e-06 8.24968e-06 0 0.000366115 4.10844e-06 3.78469e-06 0 0.000262116 0.998458 0.000292674 0.000373284 0.000226852 26887 719
GGC GCC 0.000238217 4.10328e-06 0 0.00173261 0.000110359 4.36316e-06 0 0.00238432 0.994614 5.98911e-05 0.000594399 0.000257581 27563 1313
GGG CCC 4.27286e-06 3.72368e-06 0 0.000340576 6.12738e-06 3.45352e-06 0 0.000191318 0.99818 0.00050517 0.000427402 0.000337641 29910 939
GGT ACC 2.04736e-05 5.9926e-06 0 0.00123645 5.39866e-05 5.35234e-06 0 0.000583727 0.996495 0.000504126 0.000891858 0.000203481 20146 799
GTA TAC 8.62258e-06 5.54226e-05 1.63499e-05 0 7.40158e-06 4.283e-05 2.77605e-05 0 0.99811 0.000545191 0.000809912 0.000376574 13541 369
GTC GAC 7.48273e-06 7.07693e-05 2.89525e-05 0 5.68429e-06 4.32964e-05 6.29044e-06 0 0.99853 6.2559e-05 0.000784556 0.000460272 17596 454
GTG CAC 4.40954e-06 5.50473e-06 4.53265e-05 0 4.62166e-06 1.03894e-05 8.19293e-06 0 0.997233 0.000602193 0.0012727 0.000813475 25730 705
GTT AAC 5.35249e-06 0.00015286 5.50377e-06 0 5.34639e-06 0.000143816 5.71959e-06 0 0.999034 0.000106992 0.000268425 0.0002724 18720 383
TAA TTA 0 7.51061e-06 5.89898e-06 6.923e-06 0 7.06701e-06 5.51798e-06 5.87469e-06 0.998624 0.000189676 0.000847844 0.000299291 20377 404
TAC GTA 0 2.77605e-05 4.283e-05 7.40158e-06 0 1.63499e-05 5.54226e-05 8.62258e-06 0.99811 0.000545191 0.000809912 0.000376574 13541 369
TAG CTA 0 8.58233e-06 0.000109463 7.95629e-06 0 8.66466e-06 0.000322906 3.3818e-05 0.998075 0.00013605 0.000813713 0.000484111 12595 357
TAT ATA 0 0.000134189 6.25512e-05 5.6665e-06 0 6.20975e-06 2.13695e-05 5.67345e-06 0.998529 0.000750141 0.0002556 0.000229684 17701 418
TCA TGA 0.0015498 0 4.27477e-06 6.04723e-05 0.00143116 0 4.93155e-06 3.37508e-05 0.996082 8.13208e-05 0.000477192 0.000275468 25763 906
TCC GGA 0.000262116 0 3.78469e-06 4.10844e-06 0.000366115 0 8.24968e-06 4.86628e-06 0.998458 0.000292674 0.000373284 0.000226852 26887 719
TCG CGA 0.00134487 0 1.48434e-05 3.94247e-05 0.000992222 0 2.33737e-05 0.000343913 0.991612 0.00250341 0.00172621 0.00140017 7197 345
TCT AGA 0.00088841 0 3.46753e-06 5.62352e-06 0.000505015 0 4.18561e-06 2.54832e-05 0.997366 0.000126093 0.000701556 0.000374511 29448 916
TGA TCA 3.37508e-05 4.93155e-06 0 0.00143116 6.04723e-05 4.27477e-06 0 0.0015498 0.996082 8.13208e-05 0.000477192 0.000275468 25763 906
TGC GCA 0.000388041 3.8321e-06 0 0.00299899 7.65612e-05 4.82791e-06 0 0.00221729 0.993473 0.000135733 0.000546142 0.000155497 26359 1451
TGG CCA 3.62023e-05 4.99104e-06 0 0.00135142 5.86728e-05 3.33319e-06 0 0.00108041 0.996949 0.000257959 0.000124486 0.000133292 30772 1274
TGT ACA 2.24749e-05 1.41752e-05 0 0.00232448 7.04341e-06 3.90118e-06 0 0.00103239 0.995638 8.08148e-05 0.000760449 0.000116004 26716 1203
TTA TAA 5.87469e-06 5.51798e-06 7.06701e-06 0 6.923e-06 5.89898e-06 7.51061e-06 0 0.998624 0.000189676 0.000847844 0.000299291 20377 404
TTC GAA 3.71544e-06 4.21658e-05 3.85678e-06 0 3.71179e-06 5.85349e-05 3.87978e-06 0 0.99927 0.000146035 0.000353727 0.000114797 27000 573
TTG CAA 5.9829e-06 5.48697e-06 5.2973e-06 0 4.44421e-06 7.60537e-06 4.68662e-06 0 0.999093 0.000444363 0.000202463 0.000226308 22534 470
TTT AAA 2.89598e-06 4.54669e-05 1.24864e-05 0 2.50791e-06 4.61258e-06 2.72158e-06 0 0.999179 0.000139712 0.000533319 7.76853e-05 39903 693
66 rows