Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/60043b48239290e0f4fbcf2e282a61/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/6c011b6e3fa9310df1694551efff8c/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/6c011b6e3fa9310df1694551efff8c/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/60043b48239290e0f4fbcf2e282a61/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T19:43:16.635813Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:43:16.636398Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:43:16.636412Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:43:16.636417Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:43:16.636421Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXwiPM0Y'
[2026-06-04T19:43:16.636425Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:43:16.636430Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:43:16.636433Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:43:16.636437Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:43:16.636440Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:43:16.636444Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:43:16.636448Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:43:16.636451Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:43:16.636455Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:43:16.636958Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:43:16.637078Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:43:16.643424Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:43:16.644228Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:43:16.644448Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:43:16.644796Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:43:16.645046Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.645720Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.645812Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.645883Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.645997Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.646062Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.646343Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.646664Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.646806Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.647280Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.647734Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.649304Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.649972Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.650467Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:43:16.650570Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.650880Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.651181Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.651250Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.651363Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.651427Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.651642Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.651710Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.651820Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.651886Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.651996Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.652057Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.652263Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.652702Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.652906Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.653003Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.653144Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.653247Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.653396Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.653468Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.653646Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.653837Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.654292Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.654368Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.654511Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.654581Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.654724Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.654797Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.654918Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.654992Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.655099Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.655165Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.655902Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.656380Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.656506Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.656571Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.656683Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.656748Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.656861Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.656931Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.657046Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.657118Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.657233Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.657369Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.658417Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.658612Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.658739Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.658802Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.658917Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.658986Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.659096Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.659164Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.659271Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.659337Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.659446Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.659516Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.659684Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.660530Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.660650Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.660752Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.678209Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.678459Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.678573Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.678802Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.678900Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.679015Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.679095Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.679241Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.679332Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:43:16.679398Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:43:16.682804Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.683742Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.684052Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.684503Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.685099Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.685687Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.686214Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.687277Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.688184Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.694177Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T19:43:16.697935Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T19:43:16.702129Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T19:43:16.703837Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:16.705505Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T19:43:16.706788Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T19:43:16.707848Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T19:43:16.804180Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.805366Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:16.808721Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T19:43:17.921985Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.923310Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:17.926605Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T19:43:18.027897Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:18.037909Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.038778Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.042915Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T19:43:18.070862Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.071769Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.074916Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T19:43:18.088063Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.089195Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.092444Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:18.121414Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.122600Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.126030Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T19:43:18.387423Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.387521Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.388647Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.389089Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.393046Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T19:43:18.433173Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T19:43:18.454008Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.454133Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.455338Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.455802Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.458978Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T19:43:18.460534Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T19:43:18.520389Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.521709Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.525003Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:18.586313Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.587215Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.590597Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:18.651796Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.652744Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.655462Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:18.717168Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.717265Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.718102Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.718964Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.721972Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T19:43:18.722787Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T19:43:18.784856Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.784978Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.785778Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.786135Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.789471Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T19:43:18.790805Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:18.850823Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.850930Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.851717Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.852016Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:18.855811Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T19:43:18.856458Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T19:43:19.268345Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.269262Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.272591Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T19:43:19.383786Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.384648Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.387434Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T19:43:19.449926Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.450731Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.453714Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T19:43:19.515031Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.515147Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.515883Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.516166Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.519709Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T19:43:19.581078Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.581959Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.584744Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T19:43:19.613901Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.613965Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.614632Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.614907Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.618141Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T19:43:19.618963Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T19:43:19.647570Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.648423Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.651587Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T19:43:19.713108Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.714006Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.716852Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T19:43:19.778177Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.779194Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.782542Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T19:43:19.811324Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.812185Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:19.815656Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T19:43:20.528552Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.529783Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.533041Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T19:43:20.594126Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.595133Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.599178Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:20.660099Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.661342Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.664960Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T19:43:20.725940Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.726932Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.730851Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T19:43:20.791643Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.792634Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.795905Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T19:43:20.957389Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.958114Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:20.961754Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:21.244132Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:21.273244Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.273949Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.277138Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T19:43:21.338513Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.339276Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.342815Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:21.404147Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.404887Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.407669Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T19:43:21.469166Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.469932Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.472866Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T19:43:21.534465Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.535198Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.538250Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T19:43:21.599869Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.600719Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.603819Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T19:43:21.665209Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.665976Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.668853Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T19:43:21.730436Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.731233Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.734423Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T19:43:21.896140Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.896930Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.899684Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T19:43:21.961302Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.962009Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.965023Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T19:43:21.965779Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.966272Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.969014Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T19:43:21.998488Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:21.999244Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.002343Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T19:43:22.002889Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.003407Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.005895Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T19:43:22.067810Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.068491Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.071970Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T19:43:22.133837Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.134551Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.137237Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T19:43:22.198809Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.199447Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.202946Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:22.314588Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.315224Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.318369Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T19:43:22.379663Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.380478Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.383850Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:22.445151Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.446298Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.446691Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.449124Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.450820Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T19:43:22.451981Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T19:43:22.481633Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.482227Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.484665Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.485651Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T19:43:22.599067Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.599593Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.603507Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T19:43:22.664564Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.829214Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.829931Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.833279Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T19:43:22.894497Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.958990Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.959533Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:43:22.962664Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T19:43:23.025149Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.390169Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.390670Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.393448Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T19:43:23.455249Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.719942Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.720474Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.723865Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T19:43:23.752688Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.867268Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.867738Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T19:43:23.870730Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T19:43:23.932503Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.149932Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.150347Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.152958Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T19:43:25.182345Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.182619Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.182755Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.183065Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.183280Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.187157Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:43:25.188376Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:43:25.189490Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:43:25.215818Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.215892Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.215916Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.216145Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.217834Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.219454Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:43:25.220367Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:43:25.250141Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.250284Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.250513Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:43:25.253123Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:43:25.282712Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:43:27.251048Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:43:35.525131Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:43:35.525131Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] 
[2026-06-04T19:43:35.525131Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:43:35.525201Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] 
[2026-06-04T19:43:35.525216Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:43:35.525223Z] [nf-6660043b48239290e0f4fbcf2e282a61-4ac35-7b2bl] [592_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec