File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/9d521bcf3352b85389553f9eb5d145/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8kslry1w because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 19:49:04,494 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 19:49:05,844 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 19:49:06,130 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 19:49:07,754 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 19:49:07,858 - cnv_pipe.batch.run_model - INFO - Processing cluster 1294 with 196 probes
2026-06-04 19:49:08,578 - cnv_pipe.batch.run_model.cluster1294 - INFO - Child process started for cluster 1294 with 196 probes
2026-06-04 19:50:30,432 - cnv_pipe.batch.run_model.cluster1294 - INFO - Child process finished cluster 1294. Wrote cluster_1294_samples.csv and cluster_1294_params.csv
2026-06-04 19:50:30,433 - cnv_pipe.batch.run_model - INFO - Cluster 1294 finished in 82.58 seconds. Status: SUCCESS