File Info

Filename
control_metrics.csv
Full Path
s3://natera-rnd-pltf-dev-s3-gitlab-results/daq/build2796627/edge-cases-blood-run/63529300/reports/control_metrics.csv
Size
24.4 KB
Workflow Run
gitlab-daq-build2796627-edge-cases-blood-run-63529300
Published
Jun 05, 2026 4:42 AM

Content

View in new tab
control_type sample_id variant_type qc_metric_name qc_value
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy false
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy_chromosomes NONE
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_del_dup_pass_ratio 5.2000
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_del_pass_count 52
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_dup_pass_count 10
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_missed NONE
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_recovered_count 2
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_truth_total 2
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_qc_failed false
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_cn 0
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_filter PASS
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_cn 1
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_filter PASS
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 hla germline_control_hla_alleles_recovered_count 6
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 hla germline_control_hla_alleles_truth_total 6
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_missed_variants NONE
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_recovered_count 12
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_truth_total 12
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel germline_control_snv_indel_indel_count 1369
germline NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel germline_control_snv_indel_snv_count 25673
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy false
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy_chromosomes NONE
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_del_dup_pass_ratio 4.4167
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_del_pass_count 53
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_dup_pass_count 12
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_missed NONE
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_recovered_count 2
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_truth_total 2
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_qc_failed false
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_cn 0
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_filter PASS
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_cn 1
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_filter PASS
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 hla germline_control_hla_alleles_recovered_count 6
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 hla germline_control_hla_alleles_truth_total 6
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_missed_variants NONE
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_recovered_count 12
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_truth_total 12
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel germline_control_snv_indel_indel_count 1365
germline NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel germline_control_snv_indel_snv_count 25704
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy false
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy_chromosomes NONE
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_del_dup_pass_ratio 5.5556
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_del_pass_count 50
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_dup_pass_count 9
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_missed NONE
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_recovered_count 2
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_truth_total 2
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_qc_failed false
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_cn 0
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_filter PASS
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_cn 1
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_filter PASS
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 hla germline_control_hla_alleles_recovered_count 6
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 hla germline_control_hla_alleles_truth_total 6
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_missed_variants NONE
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_recovered_count 12
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_truth_total 12
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel germline_control_snv_indel_indel_count 1366
germline NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel germline_control_snv_indel_snv_count 25633
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy false
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_abnormal_ploidy_chromosomes NONE
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_del_dup_pass_ratio 5.3333
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_del_pass_count 48
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_dup_pass_count 9
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_missed NONE
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_recovered_count 2
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_landmark_del_truth_total 2
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_qc_failed false
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_cn 0
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b17_del_filter PASS
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_cn 1
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv germline_control_cnv_ugt2b28_del_filter PASS
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 hla germline_control_hla_alleles_recovered_count 6
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 hla germline_control_hla_alleles_truth_total 6
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_missed_variants NONE
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_recovered_count 12
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel germline_control_snv_indel_giab_truth_total 12
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel germline_control_snv_indel_indel_count 1347
germline NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel germline_control_snv_indel_snv_count 25652
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv negative_somatic_control_cnv_segment_count 3
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_lci 0.02750419346202934
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_max_msi_score 0.041699592024087906
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_mean_msi_score 0.03240660671144724
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_min_msi_score 0.01997261680662632
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_msi_status MSS
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_uci 0.037309019960865136
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 msi negative_somatic_control_msi_total_sites 178
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_pct 23.03
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_sites 41
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_indel_count 5
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_snv_count 1
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 tmb negative_somatic_control_tmb_effective_coding_region_size 34.15
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 tmb negative_somatic_control_tmb_non_synonymous_count 0
negative_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 tmb negative_somatic_control_tmb_score 0.0
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv negative_somatic_control_cnv_segment_count 5
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_lci 0.02563791606811753
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_max_msi_score 0.06223834678530693
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_mean_msi_score 0.03380108010023832
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_min_msi_score 0.023869195953011513
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_msi_status MSS
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_uci 0.041964244132359114
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 msi negative_somatic_control_msi_total_sites 178
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_pct 22.47
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_sites 40
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_indel_count 2
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_snv_count 0
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 tmb negative_somatic_control_tmb_effective_coding_region_size 34.15
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 tmb negative_somatic_control_tmb_non_synonymous_count 0
negative_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 tmb negative_somatic_control_tmb_score 0.0
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv negative_somatic_control_cnv_segment_count 7
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_lci 0.036791390482357994
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_max_msi_score 0.06807906180620193
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_mean_msi_score 0.04371506236493587
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_min_msi_score 0.03552767261862755
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_msi_status MSS
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_uci 0.05063873424751375
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 msi negative_somatic_control_msi_total_sites 177
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_pct 14.12
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_sites 25
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_indel_count 3
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_snv_count 2
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 tmb negative_somatic_control_tmb_effective_coding_region_size 34.15
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 tmb negative_somatic_control_tmb_non_synonymous_count 0
negative_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 tmb negative_somatic_control_tmb_score 0.0
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv negative_somatic_control_cnv_segment_count 14
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_lci 0.045684706310907056
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_max_msi_score 0.0831565111875534
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_mean_msi_score 0.05845422744750976
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_min_msi_score 0.030927274376153946
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_msi_status MSS
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi negative_somatic_control_mimsi_uci 0.07122374858411247
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 msi negative_somatic_control_msi_total_sites 178
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_pct 20.22
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 msi negative_somatic_control_msi_unstable_sites 36
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_indel_count 8
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel negative_somatic_control_snv_indel_snv_count 2
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 tmb negative_somatic_control_tmb_effective_coding_region_size 34.15
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 tmb negative_somatic_control_tmb_non_synonymous_count 0
negative_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 tmb negative_somatic_control_tmb_score 0.0
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_missed MYCN;MET
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_copy_numbers NONE
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_truth_total 2
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 cnv positive_somatic_control_cnv_segment_count 3
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_lci 0.02120714843800325
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_max_msi_score 0.03433562442660332
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_mean_msi_score 0.026245109364390375
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_min_msi_score 0.014768386259675026
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_msi_status MSS
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_uci 0.031283070290777495
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 msi positive_somatic_control_msi_total_sites 178
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_pct 23.03
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_sites 41
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_missed_variants 163343;177678;13983;376002;13655
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_truth_total 5
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_indel_count 5
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_snv_count 1
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 tmb positive_somatic_control_tmb_effective_coding_region_size 34.15
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 tmb positive_somatic_control_tmb_non_synonymous_count 0
positive_somatic NA12878_c_0002_gDNA_0001_B23KGCJLT4_1 tmb positive_somatic_control_tmb_score 0.0
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_missed MYCN;MET
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_copy_numbers NONE
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_truth_total 2
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 cnv positive_somatic_control_cnv_segment_count 5
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_lci 0.020015799604726586
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_max_msi_score 0.047888558357954025
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_mean_msi_score 0.028641186095774172
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_min_msi_score 0.012920697219669819
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_msi_status MSS
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_uci 0.037266572586821756
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 msi positive_somatic_control_msi_total_sites 178
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_pct 22.47
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_sites 40
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_missed_variants 13983;376002;13655;163343;177678
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_truth_total 5
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_indel_count 2
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_snv_count 0
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 tmb positive_somatic_control_tmb_effective_coding_region_size 34.15
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 tmb positive_somatic_control_tmb_non_synonymous_count 0
positive_somatic NA12878_c_0002_gDNA_0002_B23KGCJLT4_1 tmb positive_somatic_control_tmb_score 0.0
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_missed MYCN;MET
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_copy_numbers NONE
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_truth_total 2
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 cnv positive_somatic_control_cnv_segment_count 7
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_lci 0.033050998227725614
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_max_msi_score 0.06920773535966873
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_mean_msi_score 0.04273972809314728
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_min_msi_score 0.021612025797367096
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_msi_status MSS
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_uci 0.052428457958568944
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 msi positive_somatic_control_msi_total_sites 177
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_pct 14.12
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_sites 25
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_missed_variants 13655;13983;163343;177678;376002
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_truth_total 5
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_indel_count 3
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_snv_count 2
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 tmb positive_somatic_control_tmb_effective_coding_region_size 34.15
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 tmb positive_somatic_control_tmb_non_synonymous_count 0
positive_somatic NA12878_c_0002_gDNA_0003_B23KGCJLT4_1 tmb positive_somatic_control_tmb_score 0.0
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_missed MYCN;MET
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_copy_numbers NONE
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv positive_somatic_control_cnv_amp_truth_total 2
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 cnv positive_somatic_control_cnv_segment_count 14
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_lci 0.03907785320955333
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_max_msi_score 0.0790727287530899
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_mean_msi_score 0.05005200821906328
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_min_msi_score 0.025883032009005547
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_msi_status MSS
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 mimsi positive_somatic_control_mimsi_uci 0.06102616322857324
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 msi positive_somatic_control_msi_total_sites 178
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_pct 20.22
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 msi positive_somatic_control_msi_unstable_sites 36
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_missed_variants 13655;13983;376002;163343;177678
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_recovered_count 0
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_coa_truth_total 5
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_indel_count 8
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 snv_indel positive_somatic_control_snv_indel_snv_count 2
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 tmb positive_somatic_control_tmb_effective_coding_region_size 34.15
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 tmb positive_somatic_control_tmb_non_synonymous_count 0
positive_somatic NA12878_c_0002_gDNA_0004_B23KGCJLT4_1 tmb positive_somatic_control_tmb_score 0.0
229 rows