cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_N5D-N1-BDNA-1_B23KGCJLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_N5D-N1-BDNA-1_B23KGCJLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:120439476, elapsed 2.9s, est remaining 55.5s, peak mem 3160MB, user 71.8s, sys 3.3s, output queue size 180
progress 10% @chr2:21015370, elapsed 5.4s, est remaining 48.9s, peak mem 3389MB, user 133.8s, sys 4.1s, output queue size 660
progress 15% @chr2:189877272, elapsed 8.4s, est remaining 47.9s, peak mem 3557MB, user 207.5s, sys 5.1s, output queue size 457
progress 20% @chr3:98788326, elapsed 11.5s, est remaining 46.0s, peak mem 3597MB, user 284.8s, sys 6.0s, output queue size 422
progress 25% @chr4:88649840, elapsed 13.8s, est remaining 41.5s, peak mem 3655MB, user 343.6s, sys 6.6s, output queue size 540
progress 30% @chr5:147636222, elapsed 15.9s, est remaining 37.1s, peak mem 3655MB, user 394.7s, sys 7.1s, output queue size 196
progress 35% @chr6:131950292, elapsed 18.8s, est remaining 34.9s, peak mem 3775MB, user 466.6s, sys 7.8s, output queue size 639
progress 40% @chr7:124822387, elapsed 21.8s, est remaining 32.7s, peak mem 3851MB, user 537.3s, sys 8.6s, output queue size 544
progress 45% @chr9:990041, elapsed 25.0s, est remaining 30.5s, peak mem 3883MB, user 618.3s, sys 9.6s, output queue size 91
progress 50% @chr10:32016829, elapsed 27.7s, est remaining 27.7s, peak mem 3889MB, user 687.6s, sys 10.3s, output queue size 100
progress 55% @chr11:48136039, elapsed 30.1s, est remaining 24.6s, peak mem 3889MB, user 746.7s, sys 10.9s, output queue size 15
progress 60% @chr12:24829823, elapsed 32.8s, est remaining 21.9s, peak mem 3889MB, user 816.1s, sys 11.3s, output queue size 706
progress 65% @chr13:49496002, elapsed 35.4s, est remaining 19.1s, peak mem 3889MB, user 880.7s, sys 12.0s, output queue size 561
progress 70% @chr15:43133803, elapsed 37.9s, est remaining 16.2s, peak mem 3889MB, user 943.0s, sys 12.4s, output queue size 457
progress 75% @chr16:30737049, elapsed 40.8s, est remaining 13.6s, peak mem 3889MB, user 1018.5s, sys 13.1s, output queue size 69
progress 80% @chr17:40339002, elapsed 43.9s, est remaining 11.0s, peak mem 3889MB, user 1097.7s, sys 13.7s, output queue size 695
progress 85% @chr19:5751647, elapsed 46.5s, est remaining 8.2s, peak mem 3893MB, user 1163.7s, sys 14.3s, output queue size 406
progress 90% @chr19:55931993, elapsed 49.1s, est remaining 5.5s, peak mem 3906MB, user 1229.4s, sys 14.7s, output queue size 103
progress 95% @chr22:36767783, elapsed 51.9s, est remaining 2.7s, peak mem 3951MB, user 1300.7s, sys 15.3s, output queue size 55
progress 100% @chrY:25622443, elapsed 53.6s, est remaining 0.0s, peak mem 3958MB, user 1342.9s, sys 15.8s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 14496162098
reads: 298557380
contig: 201779 intervals 37922265 bases
advance: 208647 calls 592.233 user 8.594 sys 625.032 real
done: 1 calls 0.328 user 0.688 sys 1.018 real
execute: 1 calls 0.008 user 0.001 sys 53.571 real
fetch_reads: 208647 calls 43.853 user 0.297 sys 47.276 real
fetch_ref: 207151 calls 0.838 user 0.769 sys 1.709 real
fetch_vcf: 207151 calls 79.536 user 2.101 sys 84.851 real
idle: 123 calls 0.104 user 0.000 sys 63.273 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 276938 calls 825.920 user 3.882 sys 861.760 real
overall: 4150956032 mem 1614.325 user 17.648 sys 56.057 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory