File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/9d9fad0636c2cd2723f0307c1ae53d/.command.log
Size
1.7 KB
Task
DAQ:SAMTOOLS_MERGE (659_cuO-N1-BDNA-1_B23KGCJLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/9d9fad0636c2cd2723f0307c1ae53d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/94c09ee5a5f19d70656d91d918f278/659_cuO-N1-BDNA-1_B23KGCJLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/9b64855451633705dffb25afcd5860/659_cuO-N1-BDNA-1_B23KGCJLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/73aa78a3d6cf31a8656564c1eec594/659_cuO-N1-BDNA-1_B23KGCJLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/5af006afa65a53f02429fd0b35b1e0/659_cuO-N1-BDNA-1_B23KGCJLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/caad5403998cffd85c547e28ffe0d3/659_cuO-N1-BDNA-1_B23KGCJLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/9d9fad0636c2cd2723f0307c1ae53d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/032682daf046f378eaad6e22be86b5/659_cuO-N1-BDNA-1_B23KGCJLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/301d04388beffa173d05813c647d57/659_cuO-N1-BDNA-1_B23KGCJLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/f26ec5c1111ff6bab58f7971d4a622/659_cuO-N1-BDNA-1_B23KGCJLT4_1.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory