File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/e902d6be74491d9ef2966679e3b67d/.command.err
Size
1.5 KB
Attempt
Detecting adapter sequence for read1...
No adapter detected for read1

Detecting adapter sequence for read2...
No adapter detected for read2

Read1 before filtering:
total reads: 940
total bases: 141940
Q20 bases: 120752(85.0726%)
Q30 bases: 93089(65.5833%)
Q40 bases: 93089(65.5833%)

Read2 before filtering:
total reads: 940
total bases: 141940
Q20 bases: 97856(68.9418%)
Q30 bases: 47510(33.4719%)
Q40 bases: 47510(33.4719%)

Read1 after filtering:
total reads: 505
total bases: 76193
Q20 bases: 64954(85.2493%)
Q30 bases: 50260(65.9641%)
Q40 bases: 50260(65.9641%)

Read2 after filtering:
total reads: 505
total bases: 76193
Q20 bases: 64412(84.5379%)
Q30 bases: 40325(52.9248%)
Q40 bases: 40325(52.9248%)

Filtering result:
reads passed filter: 1010
reads failed due to low quality: 870
reads failed due to too many N: 0
reads failed due to too short: 0
reads with adapter trimmed: 4
bases trimmed due to adapters: 124

Duplication rate: 0.319149%

Insert size peak (evaluated by paired-end reads): 0

JSON report: NTC_0002_0009_B23KGCJLT4_1.fastp.json
HTML report: NTC_0002_0009_B23KGCJLT4_1.fastp.html

fastp --in1 NTC_0002_0009_B23KGCJLT4_1_S1_L002_R1_001.fastq.gz --in2 NTC_0002_0009_B23KGCJLT4_1_S1_L002_R2_001.fastq.gz --out1 NTC_0002_0009_B23KGCJLT4_1/NTC_0002_0009_B23KGCJLT4_1_R1.fastq.gz --out2 NTC_0002_0009_B23KGCJLT4_1/NTC_0002_0009_B23KGCJLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json NTC_0002_0009_B23KGCJLT4_1.fastp.json --html NTC_0002_0009_B23KGCJLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 1 seconds