cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_0W2-N1-BDNA-1_B23KGCJLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_0W2-N1-BDNA-1_B23KGCJLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 2.9s, est remaining 54.8s, peak mem 3130MB, user 68.5s, sys 5.6s, output queue size 179
progress 10% @chr1:243499720, elapsed 5.2s, est remaining 47.0s, peak mem 3321MB, user 127.2s, sys 6.3s, output queue size 1155
progress 15% @chr2:189666133, elapsed 8.2s, est remaining 46.3s, peak mem 3496MB, user 197.6s, sys 7.3s, output queue size 452
progress 20% @chr3:98881540, elapsed 11.2s, est remaining 44.7s, peak mem 3574MB, user 273.8s, sys 8.1s, output queue size 438
progress 25% @chr4:88652012, elapsed 13.5s, est remaining 40.4s, peak mem 3574MB, user 329.7s, sys 8.6s, output queue size 98
progress 30% @chr5:147636222, elapsed 15.5s, est remaining 36.1s, peak mem 3574MB, user 380.3s, sys 9.0s, output queue size 196
progress 35% @chr6:132315635, elapsed 18.5s, est remaining 34.3s, peak mem 3662MB, user 453.4s, sys 9.8s, output queue size 639
progress 40% @chr7:102248412, elapsed 21.6s, est remaining 32.5s, peak mem 3719MB, user 527.4s, sys 10.6s, output queue size 1418
progress 45% @chr9:2032952, elapsed 25.0s, est remaining 30.5s, peak mem 3744MB, user 613.2s, sys 11.2s, output queue size 88
progress 50% @chr10:32925871, elapsed 27.9s, est remaining 27.9s, peak mem 3760MB, user 686.4s, sys 11.7s, output queue size 106
progress 55% @chr11:48163458, elapsed 30.4s, est remaining 24.9s, peak mem 3760MB, user 747.5s, sys 12.3s, output queue size 27
progress 60% @chr12:25121753, elapsed 33.3s, est remaining 22.2s, peak mem 3760MB, user 820.2s, sys 12.8s, output queue size 766
progress 65% @chr13:49702386, elapsed 36.1s, est remaining 19.5s, peak mem 3760MB, user 890.6s, sys 13.4s, output queue size 572
progress 70% @chr15:43059702, elapsed 38.9s, est remaining 16.7s, peak mem 3760MB, user 958.4s, sys 14.1s, output queue size 468
progress 75% @chr16:30737049, elapsed 42.3s, est remaining 14.1s, peak mem 3760MB, user 1044.2s, sys 15.0s, output queue size 67
progress 80% @chr17:42310507, elapsed 45.7s, est remaining 11.4s, peak mem 3760MB, user 1131.8s, sys 15.7s, output queue size 712
progress 85% @chr19:5694387, elapsed 48.9s, est remaining 8.6s, peak mem 3760MB, user 1210.8s, sys 16.6s, output queue size 405
progress 90% @chr19:56146912, elapsed 51.8s, est remaining 5.8s, peak mem 3760MB, user 1285.1s, sys 17.1s, output queue size 821
progress 95% @chr22:36767783, elapsed 55.0s, est remaining 2.9s, peak mem 3813MB, user 1364.2s, sys 17.8s, output queue size 56
progress 100% @chrY:25622443, elapsed 56.8s, est remaining 0.0s, peak mem 3825MB, user 1408.9s, sys 18.1s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 15384196353
reads: 298726454
contig: 201779 intervals 37922265 bases
advance: 208647 calls 623.250 user 9.379 sys 658.270 real
done: 1 calls 0.346 user 0.659 sys 1.009 real
execute: 1 calls 0.013 user 0.001 sys 56.768 real
fetch_reads: 208647 calls 45.685 user 0.116 sys 49.748 real
fetch_ref: 207266 calls 0.696 user 0.760 sys 1.707 real
fetch_vcf: 207266 calls 78.684 user 2.147 sys 84.552 real
idle: 123 calls 0.169 user 0.000 sys 63.076 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 275087 calls 896.558 user 5.080 sys 926.060 real
overall: 4011790336 mem 1710.695 user 19.682 sys 59.232 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory