File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/63f607a7ca76dc61e4c0b630f7c3e7/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 18249847
total bases: 2755726897
Q20 bases: 2689260596(97.5881%)
Q30 bases: 2562640758(92.9933%)
Q40 bases: 2562640758(92.9933%)

Read2 before filtering:
total reads: 18249847
total bases: 2755726897
Q20 bases: 2628914317(95.3982%)
Q30 bases: 2419054486(87.7828%)
Q40 bases: 2419054486(87.7828%)

Read1 after filtering:
total reads: 17899773
total bases: 2637165356
Q20 bases: 2584694067(98.0103%)
Q30 bases: 2471931812(93.7344%)
Q40 bases: 2471931812(93.7344%)

Read2 after filtering:
total reads: 17899773
total bases: 2637260028
Q20 bases: 2540602299(96.3349%)
Q30 bases: 2355889215(89.3309%)
Q40 bases: 2355889215(89.3309%)

Filtering result:
reads passed filter: 35799546
reads failed due to low quality: 697334
reads failed due to too many N: 2668
reads failed due to too short: 146
reads with adapter trimmed: 3450025
bases trimmed due to adapters: 131735266

Duplication rate: 9.95252%

Insert size peak (evaluated by paired-end reads): 186

JSON report: 1029_0W2-N1-BDNA-1_B23KGCJLT4_1.fastp.json
HTML report: 1029_0W2-N1-BDNA-1_B23KGCJLT4_1.fastp.html

fastp --in1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1_S48_L004_R1_001.fastq.gz --in2 1029_0W2-N1-BDNA-1_B23KGCJLT4_1_S48_L004_R2_001.fastq.gz --out1 1029_0W2-N1-BDNA-1_B23KGCJLT4_1/1029_0W2-N1-BDNA-1_B23KGCJLT4_1_R1.fastq.gz --out2 1029_0W2-N1-BDNA-1_B23KGCJLT4_1/1029_0W2-N1-BDNA-1_B23KGCJLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_0W2-N1-BDNA-1_B23KGCJLT4_1.fastp.json --html 1029_0W2-N1-BDNA-1_B23KGCJLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 224 seconds