cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_FVW-N1-BDNA-1_B23KGCJLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_FVW-N1-BDNA-1_B23KGCJLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119920198, elapsed 3.4s, est remaining 65.5s, peak mem 3300MB, user 84.5s, sys 4.2s, output queue size 170
progress 10% @chr2:23642338, elapsed 6.4s, est remaining 57.9s, peak mem 3527MB, user 159.6s, sys 5.1s, output queue size 1165
progress 15% @chr2:181535432, elapsed 10.1s, est remaining 57.4s, peak mem 3678MB, user 249.8s, sys 6.2s, output queue size 447
progress 20% @chr3:99817980, elapsed 13.9s, est remaining 55.7s, peak mem 3862MB, user 346.4s, sys 7.1s, output queue size 448
progress 25% @chr4:88439874, elapsed 16.9s, est remaining 50.6s, peak mem 3871MB, user 418.8s, sys 7.8s, output queue size 97
progress 30% @chr5:146339548, elapsed 19.5s, est remaining 45.6s, peak mem 3871MB, user 485.0s, sys 8.5s, output queue size 200
progress 35% @chr6:131949264, elapsed 23.8s, est remaining 44.3s, peak mem 3894MB, user 591.2s, sys 9.4s, output queue size 637
progress 40% @chr7:128891451, elapsed 29.3s, est remaining 43.9s, peak mem 3972MB, user 715.8s, sys 10.2s, output queue size 1467
progress 45% @chr9:2054597, elapsed 35.3s, est remaining 43.1s, peak mem 4007MB, user 870.3s, sys 11.4s, output queue size 88
progress 50% @chr10:32021226, elapsed 40.4s, est remaining 40.4s, peak mem 4083MB, user 998.7s, sys 12.5s, output queue size 107
progress 55% @chr11:48167204, elapsed 44.1s, est remaining 36.1s, peak mem 4083MB, user 1088.3s, sys 13.2s, output queue size 15
progress 60% @chr12:11810159, elapsed 48.4s, est remaining 32.3s, peak mem 4083MB, user 1195.3s, sys 14.1s, output queue size 785
progress 65% @chr13:49541676, elapsed 51.8s, est remaining 27.9s, peak mem 4083MB, user 1280.1s, sys 14.9s, output queue size 561
progress 70% @chr15:43149029, elapsed 54.9s, est remaining 23.5s, peak mem 4083MB, user 1356.5s, sys 15.5s, output queue size 454
progress 75% @chr16:30953185, elapsed 58.5s, est remaining 19.5s, peak mem 4083MB, user 1450.3s, sys 16.2s, output queue size 77
progress 80% @chr17:42673399, elapsed 62.2s, est remaining 15.6s, peak mem 4083MB, user 1545.3s, sys 16.9s, output queue size 696
progress 85% @chr19:5693298, elapsed 65.4s, est remaining 11.5s, peak mem 4083MB, user 1623.7s, sys 17.6s, output queue size 414
progress 90% @chr19:55931993, elapsed 68.4s, est remaining 7.6s, peak mem 4083MB, user 1700.9s, sys 18.4s, output queue size 101
progress 95% @chr22:36564351, elapsed 71.7s, est remaining 3.8s, peak mem 4103MB, user 1782.6s, sys 19.1s, output queue size 345
progress 100% @chrY:25622443, elapsed 73.6s, est remaining 0.0s, peak mem 4103MB, user 1830.5s, sys 19.5s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 17641179159
reads: 352044494
contig: 201779 intervals 37922265 bases
advance: 208647 calls 820.198 user 11.653 sys 855.914 real
done: 1 calls 0.368 user 0.629 sys 0.997 real
execute: 1 calls 0.009 user 0.001 sys 73.589 real
fetch_reads: 208647 calls 69.399 user 0.208 sys 73.512 real
fetch_ref: 207229 calls 0.743 user 0.928 sys 1.975 real
fetch_vcf: 207229 calls 90.007 user 2.555 sys 96.290 real
idle: 122 calls 0.155 user 0.000 sys 62.803 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 286540 calls 1162.357 user 3.944 sys 1199.512 real
overall: 4303028224 mem 2220.519 user 21.193 sys 76.050 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory