File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/e2e24a1598864b67d07ded7e103d81/.command.log
Size
1.7 KB
Task
DAQ:SAMTOOLS_MERGE (NTC_0002_0013_B23KGCJLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/e2e24a1598864b67d07ded7e103d81/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/9ec2ab2984768f49d6f642df345c02/NTC_0002_0013_B23KGCJLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/030135fec0aef1d2150859282d3274/NTC_0002_0013_B23KGCJLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/e2e24a1598864b67d07ded7e103d81/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/ffa77c771e0084078cdee7f8965168/NTC_0002_0013_B23KGCJLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/bed87cc9967d1b83a6daa3530b7a39/NTC_0002_0013_B23KGCJLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/34c8919cfb8444083ffd173d168168/NTC_0002_0013_B23KGCJLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/34e552e62bf7e9aa3c83b780d48a5c/NTC_0002_0013_B23KGCJLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/2415b4cac469d8049325a622609486/NTC_0002_0013_B23KGCJLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/96601bbf3a255c94121ecb8de92013/NTC_0002_0013_B23KGCJLT4_1.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory