Processes


BCL_TO_FASTQ:BCLCONVERT	8
DAQ:FLOWCELL_QC	1
DAQ:CAT_FASTQ	4
FASTQ_NGSCHECKMATE:NGSCHECKMATE_FASTQ	4
FASTQ_NGSCHECKMATE:NGSCHECKMATE_VAFNCM	1
DAQ:ESTIMATEGENDER	4
DAQ:MERGE_GENDER	1
DAQ:FASTP	32
DAQ:SENTIEON_BWAMEM	32
DAQ:SAMTOOLS_MERGE	4
DAQ:MARKDUPLICATES_SENTIEON	4
BAM_POSTDEDUP_QC:SAMTOOLS_STATS	4
BAM_POSTDEDUP_QC:MOSDEPTH	4
BAM_POSTDEDUP_QC:SENTIEON_MULTIPLE_METRICS	4
BAM_POSTDEDUP_QC:SENTIEON_HSMETRICS	32
BAM_POSTDEDUP_QC:SEQTOOL	4
SENTIEON_BQSR:QUALCAL_TABLE	4
SENTIEON_BQSR:QUALCAL_APPLY	4
DAQ:AGGREGATE_POSTDEDUP_QC	1
DAQ:QC_JSON_TO_CSV	1
DAQ:MULTIQC	1
DAQ:WRITE_TRACKER_YML	1
DAQ:GENERATE_RESULTS_CSV	1
GERMLINE_CNV:ClusterPanelRegions	1
GERMLINE_CNV:CalcPanelCoverage	4
GERMLINE_CNV:ProcessBatch	1
GERMLINE_CNV:ModelSingle	2659
GERMLINE_CNV:AggregateBatchPerSampleData	4
DAQ:SAMTOOLS_IDXSTATS_COUNT	4
DAQ:WRITE_SKIPPED_CONTROL_METRICS
BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2	4
BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNFILTER	4
BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC	36
BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_INDELS	4
BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_SNVS	4
VCF_SOMATIC_SNV_INDEL:PREP_TNSEQ_SNV	4
VCF_SOMATIC_SNV_INDEL:PREP_STRELKA_INDEL	4
VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT	4
VCF_SOMATIC_SNV_INDEL:EXTRACT_CHROMOSOMES	4
VCF_SOMATIC_SNV_INDEL:WHATSHAP	5
VCF_SOMATIC_SNV_INDEL:CONCAT_WHATSHAP_VCFS	4
VCF_SOMATIC_SNV_INDEL:ENSEMBLVEP_VEP	4
VCF_SOMATIC_SNV_INDEL:TABIX_VEP	4
VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS	4
VCF_SOMATIC_SNV_INDEL:ANNOTATE_BED_INFO	4
VCF_SOMATIC_SNV_INDEL:HARD_FILTER_VCF	4
VCF_SOMATIC_SNV_INDEL:TMB_SNV_INDEL	4
CONTROL_SOMATIC_VC:MSISENSOR2_MSI	4
CONTROL_SOMATIC_VC:MIMSI_ANALYZE	4
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER	10
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS	2
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_GVCFS
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DV_RESCUE	2
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON	2
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_FORCECALL	2
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:MERGE_FORCECALLED	2
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC	2
VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY	2
VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP	2
VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION	2
VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX	2
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER	2
BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:GT_CORRECTION	2
CONTROL_GERMLINE_VC:GERMLINE_CNV	2
CONTROL_GERMLINE_VC:BGZIPTABIX_GERMLINE_CNV	2
CONTROL_VARIANT_CALLING:TAR_CONTROL_VC_OUTPUTS	6
POSITIVE_SOMATIC_METRICS:MSI	2
POSITIVE_SOMATIC_METRICS:MIMSI	2
POSITIVE_SOMATIC_METRICS:TMB	2
POSITIVE_SOMATIC_METRICS:POSITIVE_SOMATIC_SNV_INDEL	2
POSITIVE_SOMATIC_METRICS:POSITIVE_SOMATIC_CNV
NEGATIVE_SOMATIC_METRICS:MSI	2
NEGATIVE_SOMATIC_METRICS:MIMSI	2
NEGATIVE_SOMATIC_METRICS:TMB	2
NEGATIVE_SOMATIC_METRICS:NEGATIVE_SOMATIC_SNV_INDEL	2
NEGATIVE_SOMATIC_METRICS:NEGATIVE_SOMATIC_CNV
GERMLINE_METRICS:GERMLINE_SNV_INDEL	2
GERMLINE_METRICS:GERMLINE_HLA
GERMLINE_METRICS:GERMLINE_CNV_METRICS	2
CONTROL_METRICS:MERGE_CONTROL_METRICS	1