cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.0s, est remaining 0.4s, peak mem 125MB, user 0.1s, sys 0.4s, output queue size 132
progress 10% @chr2:75000001, elapsed 0.0s, est remaining 0.4s, peak mem 125MB, user 0.3s, sys 0.9s, output queue size 155
progress 15% @chr3:1000001, elapsed 0.1s, est remaining 0.3s, peak mem 125MB, user 0.4s, sys 1.4s, output queue size 317
progress 20% @chr3:166000001, elapsed 0.1s, est remaining 0.3s, peak mem 125MB, user 0.6s, sys 1.7s, output queue size 248
progress 25% @chr4:124000001, elapsed 0.1s, est remaining 0.3s, peak mem 126MB, user 0.7s, sys 2.2s, output queue size 409
progress 30% @chr5:92000001, elapsed 0.1s, est remaining 0.3s, peak mem 126MB, user 0.9s, sys 2.8s, output queue size 571
progress 35% @chr6:55000001, elapsed 0.1s, est remaining 0.2s, peak mem 126MB, user 1.1s, sys 3.3s, output queue size 732
progress 40% @chr6:140000001, elapsed 0.1s, est remaining 0.2s, peak mem 127MB, user 1.3s, sys 3.7s, output queue size 893
progress 45% @chr8:73000001, elapsed 0.2s, est remaining 0.2s, peak mem 127MB, user 1.5s, sys 3.9s, output queue size 1054
progress 50% @chr9:84000001, elapsed 0.2s, est remaining 0.2s, peak mem 127MB, user 1.6s, sys 4.3s, output queue size 1217
progress 55% @chr10:87000001, elapsed 0.2s, est remaining 0.2s, peak mem 127MB, user 1.9s, sys 4.7s, output queue size 148
progress 60% @chr11:127000001, elapsed 0.2s, est remaining 0.1s, peak mem 127MB, user 2.0s, sys 5.1s, output queue size 310
progress 65% @chr13:27000001, elapsed 0.2s, est remaining 0.1s, peak mem 127MB, user 2.3s, sys 5.6s, output queue size 472
progress 70% @chr14:76000001, elapsed 0.3s, est remaining 0.1s, peak mem 127MB, user 2.4s, sys 6.0s, output queue size 634
progress 75% @chr16:11000001, elapsed 0.3s, est remaining 0.1s, peak mem 128MB, user 2.5s, sys 6.4s, output queue size 795
progress 80% @chr18:5000001, elapsed 0.3s, est remaining 0.1s, peak mem 128MB, user 2.8s, sys 6.8s, output queue size 957
progress 85% @chr20:23000001, elapsed 0.3s, est remaining 0.1s, peak mem 128MB, user 3.0s, sys 7.2s, output queue size 1119
progress 90% @chr21:44000001, elapsed 0.3s, est remaining 0.0s, peak mem 132MB, user 3.2s, sys 7.6s, output queue size 1281
progress 95% @chr1_KI270712v1_random:1, elapsed 0.4s, est remaining 0.0s, peak mem 134MB, user 3.4s, sys 7.9s, output queue size 1450
progress 100% @HLA-DRB1*09:21:1, elapsed 0.6s, est remaining 0.0s, peak mem 142MB, user 3.7s, sys 13.8s, output queue size 4867
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: AuthenticAMD
signature: 00800f12
features: 178bfbff fed83203
extended: 209c01a9 00000000
amd bits: 2fd3fbff 00c001f3
brand: AMD EPYC 7571
threads: 48 max 48
algo: TNfilter
license: sentieon:TNhaplotyper=48
input file size: 50711
output file size: 43806
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.005 user 0.003 sys 0.027 real
"predict_filter": 171 calls 0.005 user 0.005 sys 0.014 real
advance: 3219322 calls 0.840 user 3.093 sys 4.879 real
done: 1 calls 0.000 user 0.000 sys 0.004 real
execute: 1 calls 0.003 user 0.005 sys 0.936 real
fetch_ref: 448 calls 0.001 user 0.001 sys 0.008 real
idle: 16541 calls 0.673 user 0.390 sys 86.942 real
init: 1 calls 0.258 user 0.392 sys 0.830 real
overall: 150032384 mem 5.757 user 16.267 sys 2.554 real