cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:149000001, elapsed 0.0s, est remaining 0.9s, peak mem 223MB, user 0.2s, sys 1.4s, output queue size 118
progress 10% @chr2:87000001, elapsed 0.1s, est remaining 0.7s, peak mem 223MB, user 0.5s, sys 3.4s, output queue size 279
progress 15% @chr2:224000001, elapsed 0.1s, est remaining 0.6s, peak mem 223MB, user 0.8s, sys 4.9s, output queue size 225
progress 20% @chr3:46000001, elapsed 0.1s, est remaining 0.5s, peak mem 223MB, user 1.0s, sys 6.7s, output queue size 387
progress 25% @chr4:149000001, elapsed 0.2s, est remaining 0.5s, peak mem 223MB, user 1.3s, sys 8.8s, output queue size 548
progress 30% @chr5:121000001, elapsed 0.2s, est remaining 0.5s, peak mem 223MB, user 1.5s, sys 10.8s, output queue size 709
progress 35% @chr4:99000001, elapsed 0.2s, est remaining 0.4s, peak mem 223MB, user 1.6s, sys 12.9s, output queue size 870
progress 40% @chr7:70000001, elapsed 0.3s, est remaining 0.4s, peak mem 223MB, user 1.9s, sys 15.1s, output queue size 106
progress 45% @chr8:22000001, elapsed 0.3s, est remaining 0.4s, peak mem 223MB, user 2.3s, sys 17.0s, output queue size 268
progress 50% @chr9:68000001, elapsed 0.3s, est remaining 0.3s, peak mem 223MB, user 2.6s, sys 18.7s, output queue size 430
progress 55% @chr10:124000001, elapsed 0.4s, est remaining 0.3s, peak mem 223MB, user 3.0s, sys 20.6s, output queue size 591
progress 60% @chr12:23000001, elapsed 0.4s, est remaining 0.3s, peak mem 223MB, user 3.2s, sys 22.1s, output queue size 753
progress 65% @chr13:16000001, elapsed 0.4s, est remaining 0.2s, peak mem 223MB, user 3.6s, sys 23.9s, output queue size 915
progress 70% @chr14:87000001, elapsed 0.4s, est remaining 0.2s, peak mem 223MB, user 4.0s, sys 25.9s, output queue size 1077
progress 75% @chr15:76000001, elapsed 0.5s, est remaining 0.2s, peak mem 223MB, user 4.4s, sys 27.9s, output queue size 1238
progress 80% @chr18:1000001, elapsed 0.5s, est remaining 0.1s, peak mem 223MB, user 4.8s, sys 29.9s, output queue size 1400
progress 85% @chr20:21000001, elapsed 0.5s, est remaining 0.1s, peak mem 223MB, user 5.1s, sys 31.7s, output queue size 1563
progress 90% @chrX:43000001, elapsed 0.6s, est remaining 0.1s, peak mem 223MB, user 5.5s, sys 33.7s, output queue size 1724
progress 95% @chrY:53000001, elapsed 0.6s, est remaining 0.0s, peak mem 223MB, user 5.7s, sys 35.6s, output queue size 1950
progress 100% @HLA-DRB1*15:01:01:01:1, elapsed 0.7s, est remaining 0.0s, peak mem 224MB, user 5.9s, sys 42.7s, output queue size 5310
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 00050657
features: bfebfbff 7ffefbff
extended: d39ff7eb 00000818
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz
threads: 96 max 96
algo: TNfilter
license: sentieon:TNhaplotyper=96
input file size: 51111
output file size: 43432
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.006 user 0.000 sys 0.020 real
"predict_filter": 171 calls 0.006 user 0.002 sys 0.028 real
advance: 3219322 calls 0.707 user 15.764 sys 19.238 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
execute: 1 calls 0.005 user 0.002 sys 0.856 real
fetch_ref: 460 calls 0.014 user 0.051 sys 0.086 real
idle: 19769 calls 0.436 user 0.327 sys 139.504 real
init: 1 calls 0.254 user 0.095 sys 0.426 real
overall: 236343296 mem 7.418 user 45.094 sys 2.293 real