File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/18d1c5c330c0e4193f054028f1b263/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-05T03:28:54.872110Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:54.873074Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:54.873087Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:54.873091Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:54.873095Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXlFcYCE'
[2026-06-05T03:28:54.873099Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:54.873104Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:54.873107Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:54.873111Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T03:28:54.873114Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:54.873118Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:54.873122Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:54.873125Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:54.873129Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:54.873772Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:54.874036Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:54.880629Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:54.881540Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:54.882083Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:54.882214Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:54.882500Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883220Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883312Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883384Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883499Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883621Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.884035Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.884323Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.884464Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.885375Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.885725Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.886113Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.888221Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.888340Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:54.888763Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.888839Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.888954Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.889022Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.889142Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.889208Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.889382Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.889448Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.889559Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.889627Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.890002Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.890372Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.890788Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.890855Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.890968Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.891035Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.891147Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.891216Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.891336Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.891403Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.891662Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.892033Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.892145Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.892212Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.892346Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.892414Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.892529Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.892592Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.892705Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.892770Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.892880Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.892947Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.893117Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.893468Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.893987Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.894063Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.894171Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.894235Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.894345Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.894412Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.894524Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.894588Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.894696Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.894761Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.894868Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.894932Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.895310Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.895738Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.895856Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.895923Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.911099Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.911458Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.911529Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.911695Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.911767Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.911854Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.911922Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.912028Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.912100Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.912148Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:54.914972Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.915643Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.916627Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.917114Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.918045Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.919118Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.919920Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.921053Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.924488Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.925169Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T03:28:54.933524Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T03:28:54.935942Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T03:28:54.938769Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T03:28:54.943711Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T03:28:55.043512Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.044385Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.047955Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T03:28:55.108856Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.109728Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.112504Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T03:28:55.114190Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T03:28:55.117369Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.118106Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.120844Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T03:28:55.232392Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.233239Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.237109Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T03:28:56.050329Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.051193Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.054647Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T03:28:56.366759Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.367605Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.371654Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T03:28:56.383889Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.384741Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.387718Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T03:28:56.417198Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T03:28:56.449050Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.449158Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.449195Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.449218Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.449243Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.450019Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.450963Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.452715Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.453687Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.454501Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T03:28:56.456507Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.458056Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T03:28:56.460235Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T03:28:56.461896Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T03:28:56.463941Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T03:28:56.523261Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.523370Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.523403Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.523433Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.524286Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.524950Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.525597Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.528414Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.530837Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T03:28:56.532486Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T03:28:56.534064Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T03:28:56.535184Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T03:28:56.563069Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.563939Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.566402Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.567118Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.567912Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T03:28:56.571018Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T03:28:56.571714Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.572428Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.575991Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T03:28:56.637302Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.638027Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.641009Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T03:28:56.702471Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.703191Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.706926Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T03:28:56.768102Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.768924Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.772295Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T03:28:56.833588Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.834531Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.838233Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T03:28:57.158485Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T03:28:57.200621Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.200731Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.201437Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.201941Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.205406Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T03:28:57.206482Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T03:28:57.267041Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.267161Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.267824Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.268428Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.272788Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T03:28:57.274208Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T03:28:57.584531Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.585316Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.589636Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T03:28:57.650483Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.651266Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.655013Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T03:28:57.715896Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.716629Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.719966Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T03:28:57.781026Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.781800Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.785438Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T03:28:57.946890Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.947024Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.947686Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.948087Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.951772Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T03:28:57.952925Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T03:28:58.013070Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.013194Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.013915Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.016341Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.017602Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T03:28:58.021213Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T03:28:58.080838Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.080969Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.081608Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.081950Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.086233Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T03:28:58.087018Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T03:28:58.147546Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.148298Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.152255Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T03:28:58.263634Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.264449Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.267864Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T03:28:58.329243Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.329950Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.333285Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T03:28:58.444725Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.445391Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.449480Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T03:28:58.510441Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.510552Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.511152Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.511501Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.515202Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T03:28:58.516459Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T03:28:58.576376Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.576476Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.577068Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.577613Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.581151Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T03:28:58.582819Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T03:28:58.642363Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.642477Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.643033Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.643500Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.647084Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T03:28:58.648154Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T03:28:58.708148Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.708258Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.708324Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.708350Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.708889Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.709221Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.709605Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.710305Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.715868Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T03:28:58.716337Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T03:28:58.717669Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T03:28:58.718852Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T03:28:58.778587Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.778695Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.778742Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.778773Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.943515Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.944180Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.947488Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T03:28:59.008946Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.926107Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.926668Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.930105Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T03:28:59.991444Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.991559Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.992052Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.995953Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T03:29:00.057109Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.372403Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.372923Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.376411Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T03:29:00.437729Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.438072Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.438294Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.438773Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.439393Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.444060Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:29:00.445667Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:29:00.446499Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:29:00.503920Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.504040Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.504065Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.504409Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.504776Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.508453Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:29:00.508730Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:29:00.569477Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.569574Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.569856Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.573495Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:29:00.634678Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:05.513297Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:29:13.761695Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:29:13.761695Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] 
[2026-06-05T03:29:13.761695Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:29:13.761764Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] 
[2026-06-05T03:29:13.761772Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:29:13.761780Z] [nf-6018d1c5c330c0e4193f054028f1b263-1f7e7-df7zh] [600_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec