File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/dbbfacfd530aa0834c234eda8daeaa/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8usxthhe because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 03:34:34,146 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 03:34:34,931 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 03:34:35,098 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 03:34:36,047 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 03:34:36,123 - cnv_pipe.batch.run_model - INFO - Processing cluster 1457 with 180 probes
2026-06-05 03:34:36,598 - cnv_pipe.batch.run_model.cluster1457 - INFO - Child process started for cluster 1457 with 180 probes
2026-06-05 03:35:28,408 - cnv_pipe.batch.run_model.cluster1457 - INFO - Child process finished cluster 1457. Wrote cluster_1457_samples.csv and cluster_1457_params.csv
2026-06-05 03:35:28,409 - cnv_pipe.batch.run_model - INFO - Cluster 1457 finished in 52.29 seconds. Status: SUCCESS