cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_1.tnseq.vcf.gz --contamination negative_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_1.tnseq.segments --orientation_priors negative_somatic_control_1.tnseq.orientation_data.tsv negative_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:153000001, elapsed 0.1s, est remaining 1.1s, peak mem 418MB, user 0.2s, sys 2.2s, output queue size 92
progress 10% @chr2:179000001, elapsed 0.1s, est remaining 0.9s, peak mem 418MB, user 0.3s, sys 5.7s, output queue size 220
progress 15% @chr3:61000001, elapsed 0.1s, est remaining 0.8s, peak mem 418MB, user 0.5s, sys 11.1s, output queue size 347
progress 20% @chr3:168000001, elapsed 0.2s, est remaining 0.7s, peak mem 418MB, user 0.7s, sys 16.0s, output queue size 497
progress 25% @chr4:133000001, elapsed 0.2s, est remaining 0.6s, peak mem 418MB, user 1.1s, sys 21.0s, output queue size 659
progress 30% @chr5:120000001, elapsed 0.2s, est remaining 0.6s, peak mem 420MB, user 1.4s, sys 26.3s, output queue size 820
progress 35% @chr6:48000001, elapsed 0.3s, est remaining 0.5s, peak mem 420MB, user 1.6s, sys 31.6s, output queue size 981
progress 40% @chr7:54000001, elapsed 0.3s, est remaining 0.5s, peak mem 420MB, user 1.8s, sys 36.8s, output queue size 1143
progress 45% @chr8:88000001, elapsed 0.4s, est remaining 0.4s, peak mem 420MB, user 2.1s, sys 42.4s, output queue size 1305
progress 50% @chr9:85000001, elapsed 0.4s, est remaining 0.4s, peak mem 420MB, user 2.5s, sys 47.5s, output queue size 1466
progress 55% @chr11:41000001, elapsed 0.4s, est remaining 0.3s, peak mem 420MB, user 2.9s, sys 52.7s, output queue size 1585
progress 60% @chr11:76000001, elapsed 0.5s, est remaining 0.3s, peak mem 420MB, user 3.3s, sys 57.6s, output queue size 1747
progress 65% @chr13:9000001, elapsed 0.5s, est remaining 0.3s, peak mem 420MB, user 3.5s, sys 63.1s, output queue size 157
progress 70% @chr15:52000001, elapsed 0.5s, est remaining 0.2s, peak mem 420MB, user 3.8s, sys 68.4s, output queue size 319
progress 75% @chr12:127000001, elapsed 0.6s, est remaining 0.2s, peak mem 420MB, user 4.2s, sys 73.0s, output queue size 480
progress 80% @chr19:29000001, elapsed 0.6s, est remaining 0.2s, peak mem 420MB, user 4.5s, sys 78.0s, output queue size 643
progress 85% @chr22:7000001, elapsed 0.6s, est remaining 0.1s, peak mem 420MB, user 4.8s, sys 83.3s, output queue size 805
progress 90% @chrX:87000001, elapsed 0.7s, est remaining 0.1s, peak mem 420MB, user 5.2s, sys 88.2s, output queue size 967
progress 95% @chr4_KI270789v1_alt:1, elapsed 0.7s, est remaining 0.0s, peak mem 420MB, user 5.4s, sys 93.2s, output queue size 1323
progress 100% @HLA-DRB1*15:02:01:1, elapsed 0.8s, est remaining 0.0s, peak mem 420MB, user 5.6s, sys 98.9s, output queue size 4552
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 46614
output file size: 40484
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 408 calls 0.000 user 0.000 sys 0.010 real
"predict_filter": 136 calls 0.014 user 0.003 sys 0.031 real
advance: 3219322 calls 0.711 user 42.740 sys 50.191 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.000 user 0.003 sys 0.962 real
fetch_ref: 384 calls 0.004 user 0.049 sys 0.073 real
idle: 20057 calls 0.522 user 0.067 sys 306.213 real
init: 1 calls 0.293 user 0.079 sys 0.522 real
overall: 440684544 mem 7.020 user 102.519 sys 2.535 real