cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18376800, elapsed 0.0s, est remaining 0.8s, peak mem 82MB, user 0.0s, sys 0.1s, output queue size 2263
progress 10% @chr1:37761367, elapsed 0.1s, est remaining 0.8s, peak mem 96MB, user 0.1s, sys 0.3s, output queue size 4914
progress 15% @chr1:65398813, elapsed 0.1s, est remaining 0.7s, peak mem 106MB, user 0.1s, sys 0.4s, output queue size 7644
progress 20% @chr1:113814905, elapsed 0.2s, est remaining 0.7s, peak mem 111MB, user 0.2s, sys 0.5s, output queue size 3044
progress 25% @chr1:155253625, elapsed 0.2s, est remaining 0.7s, peak mem 123MB, user 0.2s, sys 0.7s, output queue size 5389
progress 30% @chr1:179102287, elapsed 0.3s, est remaining 0.6s, peak mem 126MB, user 0.2s, sys 0.8s, output queue size 7860
progress 35% @chr1:209836801, elapsed 0.3s, est remaining 0.6s, peak mem 136MB, user 0.3s, sys 1.0s, output queue size 10295
progress 40% @chr1:246986967, elapsed 0.4s, est remaining 0.6s, peak mem 145MB, user 0.3s, sys 1.1s, output queue size 12694
progress 45% @chr2:32575156, elapsed 0.4s, est remaining 0.5s, peak mem 151MB, user 0.3s, sys 1.2s, output queue size 14985
progress 50% @chr2:74461275, elapsed 0.5s, est remaining 0.5s, peak mem 163MB, user 0.3s, sys 1.4s, output queue size 17472
progress 55% @chr2:113634153, elapsed 0.5s, est remaining 0.4s, peak mem 169MB, user 0.4s, sys 1.5s, output queue size 20007
progress 60% @chr2:170997712, elapsed 0.6s, est remaining 0.4s, peak mem 184MB, user 0.4s, sys 1.6s, output queue size 22700
progress 65% @chr2:202765446, elapsed 0.6s, est remaining 0.3s, peak mem 186MB, user 0.5s, sys 1.7s, output queue size 24972
progress 70% @chr2:233793673, elapsed 0.7s, est remaining 0.3s, peak mem 202MB, user 0.5s, sys 1.9s, output queue size 27457
progress 75% @chr3:25623515, elapsed 0.7s, est remaining 0.2s, peak mem 208MB, user 0.6s, sys 2.1s, output queue size 29672
progress 80% @chr3:49806073, elapsed 0.7s, est remaining 0.2s, peak mem 220MB, user 0.6s, sys 2.2s, output queue size 32147
progress 85% @chr3:101860457, elapsed 0.8s, est remaining 0.1s, peak mem 231MB, user 0.6s, sys 2.4s, output queue size 34785
progress 90% @chr3:140563080, elapsed 0.8s, est remaining 0.1s, peak mem 240MB, user 0.7s, sys 2.5s, output queue size 37397
progress 95% @chr3:188240450, elapsed 0.9s, est remaining 0.0s, peak mem 250MB, user 0.7s, sys 2.7s, output queue size 39790
progress 100% @chr4:30721423, elapsed 0.9s, est remaining 0.0s, peak mem 259MB, user 0.8s, sys 2.8s, output queue size 42025
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692759
output file size: 22305
reads: 1001089
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.000 user 0.000 sys 0.019 real
advance: 51084 calls 0.009 user 0.005 sys 0.025 real
calc: 100735 calls 0.005 user 0.004 sys 0.019 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.000 sys 1.790 real
fetch: 100735 calls 0.000 user 0.000 sys 0.019 real
fetch_ref: 100735 calls 0.059 user 0.019 sys 0.365 real
idle: 39 calls 0.006 user 0.010 sys 22.681 real
init: 1 calls 0.045 user 0.000 sys 0.042 real
region: 100735 calls 0.001 user 0.000 sys 0.023 real
tracker: 100735 calls 0.011 user 0.007 sys 0.092 real
overall: 275517440 mem 1.443 user 4.363 sys 2.909 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory