Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/77a3c816928cf056a2a709ea29f531/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/dd01b13fa93c51e60a35ac29f80fb4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/dd01b13fa93c51e60a35ac29f80fb4/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-h0bf7i53 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 03:32:09,935 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 03:32:10,813 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 03:32:10,985 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 03:32:11,930 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 03:32:12,097 - cnv_pipe.batch.run_model - INFO - Processing cluster 520 with 123 probes
2026-06-05 03:32:12,465 - cnv_pipe.batch.run_model.cluster520 - INFO - Child process started for cluster 520 with 123 probes
2026-06-05 03:32:52,236 - cnv_pipe.batch.run_model.cluster520 - INFO - Child process finished cluster 520. Wrote cluster_520_samples.csv and cluster_520_params.csv
2026-06-05 03:32:52,237 - cnv_pipe.batch.run_model - INFO - Cluster 520 finished in 40.14 seconds. Status: SUCCESS