File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/fe1a3f7ecbfb51f3fec655ec2a5289/.command.err
Size
61.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[2026-06-05T03:28:43.869781Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:43.870293Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:43.870313Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:43.870320Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:43.870326Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXeWWzCu'
[2026-06-05T03:28:43.870331Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:43.870339Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:43.870345Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:43.870350Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] [RunParameters] memMb: 761785
[2026-06-05T03:28:43.870356Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:43.870361Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:43.870367Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:43.870372Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:43.870378Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:43.871073Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:43.871193Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:43.877102Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:43.877802Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:43.877989Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:43.878224Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:43.878533Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.878915Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.879007Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.879083Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.879208Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.879292Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.879423Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.879488Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.879772Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.880007Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.880185Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.880438Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.880828Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.881446Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.882471Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.883319Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.883578Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:43.883757Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.884022Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.884235Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.884438Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.884511Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.884628Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.884697Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.884808Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.884870Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.884986Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.885052Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.885164Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.885352Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.885718Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.885787Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.885912Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.885975Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.886088Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.886154Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.886265Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.886329Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.886442Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.886510Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.886654Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.886719Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.887083Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.887407Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.888037Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.888101Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.888214Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.888331Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.888482Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.888644Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.889096Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.889164Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.889275Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.889338Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.889452Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.889514Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.889632Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.889713Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.889819Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.889884Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.889999Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.890061Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.890171Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.890408Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.890979Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.891051Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.907253Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.907627Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.907707Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.907960Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.908128Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.908353Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.908427Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.908543Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.910072Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:43.910344Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:43.910450Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.911237Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.911660Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.912299Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.913097Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.914140Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.914846Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.915781Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.917288Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.921092Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T03:28:43.925163Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T03:28:43.926097Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T03:28:43.928332Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T03:28:43.931932Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T03:28:43.933557Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T03:28:43.936707Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T03:28:43.984644Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.985556Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.988379Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T03:28:43.993299Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.994073Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.997188Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T03:28:44.861613Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.862503Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.866075Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T03:28:44.894554Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.895542Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.898428Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T03:28:45.461327Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.461424Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.462127Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.462581Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.466104Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T03:28:45.494266Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T03:28:45.494895Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.495764Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.496202Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.498676Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.499190Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T03:28:45.501489Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T03:28:45.530732Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.531532Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.534138Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T03:28:45.563683Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.563759Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.564401Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.564652Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.567810Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T03:28:45.568959Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T03:28:45.596948Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.597692Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.600158Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T03:28:45.630047Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.630806Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.633738Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T03:28:45.694980Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.695780Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.698359Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T03:28:45.860377Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.861164Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.863781Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T03:28:45.925368Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.925468Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.926172Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.926461Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.929488Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T03:28:45.930625Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T03:28:46.592416Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.593156Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.595836Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T03:28:46.625114Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.625918Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.628540Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T03:28:46.790426Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.791145Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.793911Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T03:28:46.823211Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.823960Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.826889Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T03:28:46.831664Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.832261Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.834607Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T03:28:46.864299Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.864393Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.864422Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.865043Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.865287Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.865768Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.867999Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T03:28:46.870496Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T03:28:46.870851Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T03:28:46.932379Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.932997Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.936006Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T03:28:46.997241Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.997904Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.000421Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T03:28:47.124587Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T03:28:47.162747Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.162836Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.163484Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.163838Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.166671Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T03:28:47.167523Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T03:28:47.195767Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.196412Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.198197Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.198859Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.199156Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T03:28:47.201582Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T03:28:47.614006Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.614649Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.617278Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T03:28:47.729099Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.729752Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.732425Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T03:28:47.761857Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.762458Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.765011Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T03:28:47.794440Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.795031Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.797251Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T03:28:47.826918Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.827535Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.830073Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T03:28:47.859606Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.860218Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.862924Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T03:28:47.974616Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.974714Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.975291Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.975978Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.978757Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T03:28:47.979742Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T03:28:48.008151Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.008730Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.011024Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T03:28:48.040670Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.041258Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.043970Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T03:28:48.356095Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.356681Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.359180Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T03:28:48.420737Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.421311Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.423886Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T03:28:48.453361Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.453863Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.456331Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T03:28:48.517902Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.518475Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.521042Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T03:28:48.582566Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.583152Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.585995Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T03:28:48.847784Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.848339Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.851243Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T03:28:48.880181Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.880648Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.882940Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T03:28:48.912689Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.913208Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.915857Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T03:28:48.945440Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.945945Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.948610Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T03:28:49.010340Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.010423Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.010858Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.013119Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T03:28:49.042813Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.106796Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.107231Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.109817Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T03:28:49.139197Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.303405Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.303813Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.306019Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T03:28:49.336534Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.336596Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.336944Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.339281Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T03:28:49.368946Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.432924Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.432989Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.433306Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.433657Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.435792Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T03:28:49.436869Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T03:28:49.466340Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.466399Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.931130Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.931494Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.933687Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T03:28:49.963642Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.963871Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.963987Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.964223Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.964717Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.967530Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:28:49.968731Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:28:49.969252Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:28:49.997122Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.997178Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.997197Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.997363Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.997567Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.999666Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:28:50.000607Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:28:50.030295Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.030365Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.030534Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.032606Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:28:50.062546Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.486243Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:29:02.758725Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:29:02.758725Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] 
[2026-06-05T03:29:02.758725Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:29:02.758777Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] 
[2026-06-05T03:29:02.758784Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:29:02.758791Z] [nf-37fe1a3f7ecbfb51f3fec655ec2a5289-9ac4a-59ckr] [532_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec