Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/77a3c816928cf056a2a709ea29f531/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/0e4d6c83e46525aa26eb1fcb43c0e5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/0e4d6c83e46525aa26eb1fcb43c0e5/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-0jkh5dtp because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 03:30:51,593 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 03:30:52,563 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 03:30:52,756 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 03:30:53,833 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 03:30:53,999 - cnv_pipe.batch.run_model - INFO - Processing cluster 118 with 165 probes
2026-06-05 03:30:54,460 - cnv_pipe.batch.run_model.cluster118 - INFO - Child process started for cluster 118 with 165 probes
2026-06-05 03:31:52,709 - cnv_pipe.batch.run_model.cluster118 - INFO - Child process finished cluster 118. Wrote cluster_118_samples.csv and cluster_118_params.csv
2026-06-05 03:31:52,710 - cnv_pipe.batch.run_model - INFO - Cluster 118 finished in 58.71 seconds. Status: SUCCESS