File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/afd9b185de0fb75915db8de1197604/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-qws7h5yo because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 03:34:27,060 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 03:34:27,875 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 03:34:28,048 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 03:34:29,053 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 03:34:29,236 - cnv_pipe.batch.run_model - INFO - Processing cluster 1414 with 190 probes
2026-06-05 03:34:29,608 - cnv_pipe.batch.run_model.cluster1414 - INFO - Child process started for cluster 1414 with 190 probes
2026-06-05 03:35:24,724 - cnv_pipe.batch.run_model.cluster1414 - INFO - Child process finished cluster 1414. Wrote cluster_1414_samples.csv and cluster_1414_params.csv
2026-06-05 03:35:24,725 - cnv_pipe.batch.run_model - INFO - Cluster 1414 finished in 55.49 seconds. Status: SUCCESS