Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/77a3c816928cf056a2a709ea29f531/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/b9ffb2b02208874a3c23545e46ed39/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/b9ffb2b02208874a3c23545e46ed39/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-gz5g8jmo because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 03:34:19,488 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 03:34:20,329 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 03:34:20,502 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 03:34:21,492 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 03:34:21,652 - cnv_pipe.batch.run_model - INFO - Processing cluster 1360 with 186 probes
2026-06-05 03:34:22,024 - cnv_pipe.batch.run_model.cluster1360 - INFO - Child process started for cluster 1360 with 186 probes
2026-06-05 03:35:17,662 - cnv_pipe.batch.run_model.cluster1360 - INFO - Child process finished cluster 1360. Wrote cluster_1360_samples.csv and cluster_1360_params.csv
2026-06-05 03:35:17,663 - cnv_pipe.batch.run_model - INFO - Cluster 1360 finished in 56.01 seconds. Status: SUCCESS