File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/09d5e06058361a1a5e02ac2de522a4/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXlWABnX/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXlWABnX/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXlWABnX/chr19_15162349-15162662.bed.gz.tbi
[2026-06-05T03:28:39.419596Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:39.420490Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:39.420502Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:39.420508Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:39.420514Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXlWABnX'
[2026-06-05T03:28:39.420519Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:39.420527Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:39.420532Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:39.420537Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-05T03:28:39.420542Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:39.420547Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:39.420553Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:39.420558Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:39.420563Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:39.420947Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:39.421039Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:39.427986Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:39.428462Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:39.428718Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:39.428915Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:39.429155Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.429571Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.429704Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.429799Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.429950Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.430034Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.430414Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.430561Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.430803Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.430999Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.431137Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.431403Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.431554Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.431775Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.433307Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.433770Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:39.434454Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.434547Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.434688Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.434772Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.435128Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.435432Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.435583Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.435672Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.435813Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.435890Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.436035Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.436116Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.436252Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.436334Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.436503Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.436903Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.437231Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.437311Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.437450Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.437530Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.437682Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.437764Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.437903Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.437987Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.438180Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.438689Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.438830Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.438909Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.439968Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.440373Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.440521Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.440598Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.440824Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.440906Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.441043Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.441122Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.441262Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.441341Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.441658Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.442145Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.442298Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.442384Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.442521Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.442632Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.442772Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.442850Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.443001Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.443082Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.443454Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.444031Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.461733Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.462204Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.462357Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.463094Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.463172Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.463668Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.463781Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.464002Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.464278Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.466232Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.466445Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.466748Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.467298Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.467689Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.467938Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.468435Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:39.468992Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.469428Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:39.469806Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.475096Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T03:28:39.479654Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T03:28:39.483804Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T03:28:39.485590Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T03:28:39.489428Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T03:28:39.489824Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T03:28:39.586675Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T03:28:39.594987Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.595792Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:39.599536Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T03:28:40.912076Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.912949Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.916532Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T03:28:41.077466Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.078382Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.081535Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T03:28:41.101159Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T03:28:41.110581Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.110657Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.111546Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.111879Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.115996Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T03:28:41.117048Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T03:28:41.144123Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.145033Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.147941Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T03:28:41.259294Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.260180Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.263716Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T03:28:41.474778Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.475654Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.479084Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T03:28:41.539882Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.540780Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.543999Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T03:28:41.604708Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.605867Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.609421Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T03:28:41.720399Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.721285Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.724679Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T03:28:42.086144Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.087074Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.090571Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T03:28:42.151412Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.152340Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.155332Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T03:28:42.216452Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.217317Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.220618Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T03:28:42.582069Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.583031Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.586333Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T03:28:42.747455Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.747573Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.748433Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.748687Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.752514Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T03:28:42.753717Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T03:28:42.813250Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.813355Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.814190Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.814482Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.817855Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T03:28:42.819241Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T03:28:42.878887Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.879806Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.883497Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T03:28:43.295092Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.295998Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.299477Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T03:28:43.410386Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.410459Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.411139Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.411476Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.415362Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T03:28:43.416612Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T03:28:43.427973Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.428636Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.431681Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T03:28:43.460459Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.461129Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.464989Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T03:28:43.493177Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.493851Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.496788Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T03:28:43.557869Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.558531Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.561457Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T03:28:43.622734Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.623592Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.626729Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T03:28:43.687751Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.688579Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.691534Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T03:28:44.103561Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.104388Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.107588Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T03:28:44.218748Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.219628Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.222879Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T03:28:44.283547Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.284252Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.287338Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T03:28:44.398653Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.399504Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.402553Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T03:28:44.463575Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.464305Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.467423Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T03:28:44.728782Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.729597Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.732578Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T03:28:44.793833Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.794607Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.797558Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T03:28:44.858562Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.859254Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.862069Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T03:28:44.923235Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.923956Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.926781Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T03:28:44.987871Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.987974Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.988647Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.988959Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.992559Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T03:28:45.025274Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T03:28:45.053340Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.053409Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.053435Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.054020Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.054407Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.054893Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.058612Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T03:28:45.060144Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T03:28:45.061524Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T03:28:45.119388Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.119451Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.119487Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.120015Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.120383Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.120695Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.124610Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T03:28:45.127472Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T03:28:45.164549Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T03:28:45.185350Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.185412Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.186006Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.186338Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.189299Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T03:28:45.190373Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T03:28:45.250412Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.251024Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.254260Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T03:28:46.467370Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.468035Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.471279Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T03:28:46.532251Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.646352Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.646918Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.649773Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T03:28:46.711040Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.975518Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.976100Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.979462Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T03:28:46.991944Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.992419Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.995476Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T03:28:47.024381Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.026018Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.240270Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.240877Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.244077Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T03:28:47.304978Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.419148Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.419764Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.422714Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T03:28:47.483698Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.898188Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.898760Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.901498Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T03:28:47.962826Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.227163Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.227683Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.230428Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T03:28:48.259559Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.259889Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.260067Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.260409Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.260922Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.264872Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:28:48.267781Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:28:48.303041Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:28:48.325001Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.325071Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.325099Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.325390Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.325719Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.328408Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:28:48.329271Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:28:48.357843Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.359168Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.359435Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.361833Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:28:48.391228Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.057419Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:28:58.308331Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:28:58.308331Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] 
[2026-06-05T03:28:58.308331Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:28:58.308396Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] 
[2026-06-05T03:28:58.308405Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:28:58.308414Z] [nf-2f09d5e06058361a1a5e02ac2de522a4-71edc-kqcqf] [781_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec