apiVersion: batch/v1
kind: Job
metadata:
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  namespace: nextflow
  labels: &id001 {nextflow.io/processName: DAQ_GERMLINE_CNV_ModelSingle, nextflow.io/runName: gitlab-daq-build2796627-regression-run-63529297,
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    pltf/run-id: 88c343f9, pltf/run-engine: nextflow, pltf/run-creator: svc-gitlab-ci}
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      (951)"}', karpenter.sh/do-not-disrupt: 'true'}
  ownerReferences:
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    uid: cbcbf158-b92a-47e5-b1d9-81a79248384a, controller: true, blockOwnerDeletion: true}
spec:
  backoffLimit: 0
  template:
    metadata:
      name: nf-26e4254943759c9589a2136eb9f6de43-46802
      namespace: nextflow
      labels: *id001
      annotations: *id002
    spec:
      restartPolicy: Never
      containers:
      - name: nextflow
        image: 292967571998.dkr.ecr.us-west-2.amazonaws.com/sarek/altera_cnv:0.4.0
        args: [/bin/bash, -o, pipefail, -c, 'trap "{ ret=$?; /opt/s5cmd/bin/s5cmd
            --log error cp .command.log s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/e4254943759c9589a2136eb9f6de43/.command.log||true;
            exit $ret; }" EXIT; /opt/s5cmd/bin/s5cmd --log error cat s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/e4254943759c9589a2136eb9f6de43/.command.run
            | bash 2>&1 | tee .command.log']
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        imagePullPolicy: Always
        env:
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        - {name: SSL_CERT_FILE, value: /opt/s5cmd/ssl/ca-certificates.crt}
        resources:
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          limits: {memory: 30720Mi, ephemeral-storage: 30720Mi}
        volumeMounts:
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        - {name: vol-4826, mountPath: /app}
        - {name: vol-4827, mountPath: /mnt/secrets}
        - {name: vol-4828, mountPath: /opt/s5cmd}
      nodeSelector: {workload: nextflow-task, karpenter.sh/capacity-type: spot}
      affinity:
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            nodeSelectorTerms:
            - matchExpressions:
              - {key: eks.amazonaws.com/instance-gpu-count, operator: DoesNotExist}
      serviceAccountName: sa-nextflow
      securityContext: {runAsUser: 1000}
      tolerations:
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      volumes:
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        emptyDir: []
      - name: vol-4826
        emptyDir: []
      - name: vol-4827
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      - name: vol-4828
        hostPath: {path: /opt/s5cmd}
  ttlSecondsAfterFinished: 28800