cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.1s, est remaining 2.8s, peak mem 433MB, user 0.3s, sys 3.5s, output queue size 10
progress 10% @chr2:75000001, elapsed 0.3s, est remaining 2.4s, peak mem 800MB, user 0.6s, sys 6.9s, output queue size 41
progress 15% @chr2:234000001, elapsed 0.4s, est remaining 2.1s, peak mem 1001MB, user 0.9s, sys 10.2s, output queue size 24
progress 20% @chr3:154000001, elapsed 0.5s, est remaining 2.0s, peak mem 1193MB, user 1.2s, sys 13.4s, output queue size 8
progress 25% @chr4:114000001, elapsed 0.6s, est remaining 1.8s, peak mem 1349MB, user 1.5s, sys 16.6s, output queue size 1
progress 30% @chr5:76000001, elapsed 0.7s, est remaining 1.7s, peak mem 1504MB, user 1.9s, sys 19.8s, output queue size 10
progress 35% @chr6:65000001, elapsed 0.8s, est remaining 1.5s, peak mem 1643MB, user 2.0s, sys 23.1s, output queue size 10
progress 40% @chr7:53000001, elapsed 0.9s, est remaining 1.4s, peak mem 1793MB, user 2.3s, sys 26.2s, output queue size 2
progress 45% @chr8:59000001, elapsed 1.1s, est remaining 1.3s, peak mem 1925MB, user 2.6s, sys 29.4s, output queue size 16
progress 50% @chr9:70000001, elapsed 1.2s, est remaining 1.2s, peak mem 2020MB, user 2.7s, sys 32.7s, output queue size 9
progress 55% @chr10:94000001, elapsed 1.3s, est remaining 1.0s, peak mem 2072MB, user 2.9s, sys 35.8s, output queue size 7
progress 60% @chr11:124000001, elapsed 1.4s, est remaining 0.9s, peak mem 2146MB, user 3.2s, sys 38.9s, output queue size 18
progress 65% @chr13:16000001, elapsed 1.5s, est remaining 0.8s, peak mem 2224MB, user 3.4s, sys 42.0s, output queue size 4
progress 70% @chr14:62000001, elapsed 1.6s, est remaining 0.7s, peak mem 2261MB, user 3.7s, sys 45.0s, output queue size 4
progress 75% @chr16:15000001, elapsed 1.7s, est remaining 0.6s, peak mem 2314MB, user 3.9s, sys 48.1s, output queue size 28
progress 80% @chr18:1, elapsed 1.8s, est remaining 0.5s, peak mem 2348MB, user 4.1s, sys 51.2s, output queue size 16
progress 85% @chr20:18000001, elapsed 1.9s, est remaining 0.3s, peak mem 2396MB, user 4.3s, sys 54.3s, output queue size 10
progress 90% @chrX:46000001, elapsed 2.3s, est remaining 0.3s, peak mem 2798MB, user 7.4s, sys 55.6s, output queue size 114
progress 95% @chrY:44000001, elapsed 2.4s, est remaining 0.1s, peak mem 2819MB, user 10.0s, sys 56.3s, output queue size 276
progress 100% @chr21:41000001, elapsed 6.2s, est remaining 0.0s, peak mem 2839MB, user 28.0s, sys 57.3s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50047052
output file size: 93248813
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.021 real
ReadQualCal::delayed_init: 1 calls 0.006 user 0.001 sys 0.028 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1.442 user 6.783 sys 8.559 real
done: 1 calls 0.298 user 0.219 sys 0.518 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.002 user 0.000 sys 6.282 real
fetch: 3219323 calls 0.235 user 7.118 sys 7.507 real
fetch_reads: 3219322 calls 0.224 user 6.792 sys 7.593 real
fetch_ref: 13004 calls 0.032 user 0.011 sys 0.049 real
fetch_vcf: 13004 calls 1.540 user 0.059 sys 1.589 real
idle: 2259 calls 2.018 user 0.242 sys 134.179 real
init: 1 calls 0.012 user 0.001 sys 0.033 real
update: 13229 calls 8.026 user 0.872 sys 9.312 real
write: 3219323 calls 12.446 user 6.750 sys 19.528 real
overall: 2977280000 mem 34.688 user 57.989 sys 7.656 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.030 user 0.000 sys 0.028 real
done: 1 calls 0.049 user 0.011 sys 0.059 real
idle: 60 calls 0.002 user 0.000 sys 31.187 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83648512 mem 0.090 user 0.012 sys 1.051 real