File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/1e06a543d6000404c5173fff2cc293/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:141000001, elapsed 0.0s, est remaining 0.8s, peak mem 111MB, user 0.1s, sys 0.7s, output queue size 20
progress 10% @chr2:50000001, elapsed 0.1s, est remaining 0.7s, peak mem 111MB, user 0.2s, sys 1.7s, output queue size 23
progress 15% @chr2:218000001, elapsed 0.1s, est remaining 0.6s, peak mem 111MB, user 0.4s, sys 2.6s, output queue size 21
progress 20% @chr3:162000001, elapsed 0.1s, est remaining 0.6s, peak mem 111MB, user 0.6s, sys 3.4s, output queue size 8
progress 25% @chr4:122000001, elapsed 0.2s, est remaining 0.5s, peak mem 111MB, user 0.7s, sys 4.4s, output queue size 22
progress 30% @chr5:92000001, elapsed 0.2s, est remaining 0.5s, peak mem 111MB, user 0.9s, sys 5.2s, output queue size 12
progress 35% @chr6:63000001, elapsed 0.2s, est remaining 0.5s, peak mem 111MB, user 1.1s, sys 6.2s, output queue size 17
progress 40% @chr7:58000001, elapsed 0.3s, est remaining 0.4s, peak mem 111MB, user 1.3s, sys 7.0s, output queue size 31
progress 45% @chr8:55000001, elapsed 0.3s, est remaining 0.4s, peak mem 111MB, user 1.4s, sys 8.1s, output queue size 15
progress 50% @chr9:97000001, elapsed 0.4s, est remaining 0.4s, peak mem 111MB, user 1.5s, sys 9.2s, output queue size 28
progress 55% @chr10:95000001, elapsed 0.4s, est remaining 0.3s, peak mem 111MB, user 1.7s, sys 10.5s, output queue size 12
progress 60% @chr11:123000001, elapsed 0.5s, est remaining 0.3s, peak mem 111MB, user 2.0s, sys 11.7s, output queue size 17
progress 65% @chr13:39000001, elapsed 0.5s, est remaining 0.3s, peak mem 111MB, user 2.2s, sys 13.0s, output queue size 10
progress 70% @chr14:37000001, elapsed 0.6s, est remaining 0.2s, peak mem 111MB, user 2.5s, sys 14.2s, output queue size 24
progress 75% @chr16:11000001, elapsed 0.6s, est remaining 0.2s, peak mem 111MB, user 2.7s, sys 15.4s, output queue size 18
progress 80% @chr17:75000001, elapsed 0.7s, est remaining 0.2s, peak mem 111MB, user 2.8s, sys 16.7s, output queue size 18
progress 85% @chr20:16000001, elapsed 0.7s, est remaining 0.1s, peak mem 111MB, user 2.9s, sys 18.1s, output queue size 20
progress 90% @chrX:35000001, elapsed 0.8s, est remaining 0.1s, peak mem 132MB, user 3.5s, sys 18.8s, output queue size 114
progress 95% @chrY:50000001, elapsed 0.8s, est remaining 0.0s, peak mem 138MB, user 4.0s, sys 19.8s, output queue size 271
progress 100% @chr21:41000001, elapsed 1.2s, est remaining 0.0s, peak mem 153MB, user 5.6s, sys 21.2s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 50047052
reads: 1001838
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.342 user 10.019 sys 12.682 real
done: 1 calls 0.006 user 0.000 sys 0.010 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.004 user 0.003 sys 1.218 real
idle: 75 calls 0.009 user 0.023 sys 40.411 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 160587776 mem 6.243 user 22.068 sys 2.885 real