Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/ee0d1b137262523aaeece8afc70a4c/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/ee0d1b137262523aaeece8afc70a4c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/43822faf2c2779416cb601556825c7/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/43822faf2c2779416cb601556825c7/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T03:28:55.667759Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:55.668443Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:55.668454Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:55.668460Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:55.668464Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXIEmv8R'
[2026-06-05T03:28:55.668468Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:55.668473Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:55.668477Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:55.668481Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T03:28:55.668484Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:55.668488Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:55.668492Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:55.668495Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:55.668499Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:55.669057Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:55.669176Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:55.675369Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:55.676126Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:55.676588Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:55.676746Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:55.677016Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.677675Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.677767Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.677840Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.677958Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.678026Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.678208Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.678403Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.678865Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.678980Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.679207Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.679724Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.680258Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.680485Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.682418Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.683304Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.683384Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.683520Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.683758Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:55.683891Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.684174Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.684476Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.684995Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.685117Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.685248Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.685320Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.685446Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.685515Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.685630Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.685695Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.685875Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.686107Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.686756Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.686824Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.686936Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.687001Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.687111Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.687178Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.687286Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.687355Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.687465Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.687528Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.687640Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.687803Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.688458Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.688528Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.688641Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.688706Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.688877Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.688943Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.689055Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.689121Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.689229Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.689288Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.689428Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.689669Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.690229Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.690303Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.690413Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.690480Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.690611Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.690679Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.690796Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.690860Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.690973Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.691049Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.691163Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.691292Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.691933Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.692001Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.692136Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.692201Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.692311Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.692376Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.708785Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.708919Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.708995Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.709171Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.709243Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.709334Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.709402Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.709519Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.709593Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.709641Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:55.719517Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.720363Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.720723Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.722770Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.723652Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T03:28:55.724031Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.726324Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.726931Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T03:28:55.727435Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.728245Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.728860Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.733250Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T03:28:55.740169Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T03:28:55.745464Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T03:28:55.746015Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T03:28:55.748761Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T03:28:55.849177Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.850248Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.857262Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T03:28:56.466554Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.467645Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.471022Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T03:28:57.079845Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T03:28:57.083305Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.084487Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.088050Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T03:28:57.199205Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.200271Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.204324Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T03:28:57.315550Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.316484Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.319484Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T03:28:57.380857Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.381803Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.385695Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T03:28:57.646928Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.647023Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.647856Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.648296Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.652315Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T03:28:57.653636Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T03:28:57.713333Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.714259Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.717516Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T03:28:57.778799Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.779694Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.783293Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T03:28:58.145376Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.146272Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.149494Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T03:28:58.210881Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.211794Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.215724Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T03:28:58.276763Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.277645Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.281223Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T03:28:58.342105Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.343001Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.346390Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T03:28:58.658290Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.659166Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.663154Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T03:28:58.723896Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.724757Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.728092Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T03:28:58.789389Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.790337Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.793560Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T03:28:58.905220Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.906056Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.909573Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T03:28:58.972371Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.973177Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.976838Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T03:28:59.037926Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.038789Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.042099Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T03:28:59.354209Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.355222Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.358344Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T03:28:59.419447Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.420474Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.424632Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T03:28:59.786083Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.787124Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.790236Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T03:28:59.851572Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.852598Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.855880Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T03:28:59.917072Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.918079Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.921535Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T03:28:59.982284Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.983491Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.986747Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T03:29:00.248594Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.248698Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.249693Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.250273Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.254733Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T03:29:00.255852Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T03:29:00.315582Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.315685Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.316416Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.316728Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.320695Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T03:29:00.321053Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.321754Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.322345Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T03:29:00.324976Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T03:29:00.386093Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.386180Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.386209Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.386920Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.387334Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.387870Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.393373Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T03:29:00.394798Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T03:29:00.396210Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T03:29:00.420109Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.420807Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.424792Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T03:29:00.485560Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.486330Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.489603Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T03:29:01.102355Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.103064Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.106822Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T03:29:01.218001Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.218774Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.222757Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T03:29:01.283840Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.283920Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.284535Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.285030Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.288825Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T03:29:01.289361Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T03:29:01.350151Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.350248Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.350862Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.351384Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.354776Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T03:29:01.356082Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T03:29:01.416317Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.416428Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.417056Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.417389Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.420856Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T03:29:01.422558Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T03:29:01.481913Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.481992Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.482583Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.482973Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.486839Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T03:29:01.488003Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T03:29:01.548215Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.548877Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.552432Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T03:29:01.613624Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.613713Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.614292Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.616197Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.618499Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T03:29:01.619703Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T03:29:01.624545Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.625044Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.628131Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T03:29:01.657393Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.657477Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.658000Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.658793Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.661138Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.662787Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T03:29:01.663835Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.664044Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T03:29:01.667085Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T03:29:01.728290Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.728372Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.728396Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.728921Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.729428Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.729943Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.733677Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T03:29:01.735412Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T03:29:01.736608Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T03:29:01.796481Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.796566Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.796592Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.796630Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.797139Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.797586Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.797966Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.798535Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.802685Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T03:29:01.805216Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T03:29:01.805540Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T03:29:01.808155Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T03:29:01.865854Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.865955Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.865981Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.130783Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.131306Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.134595Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T03:29:02.196104Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.011978Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.012509Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.016002Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T03:29:03.077051Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.391889Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.392382Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.395274Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T03:29:03.456495Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.488525Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.488919Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.492174Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T03:29:03.552997Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.767463Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.767879Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.771270Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T03:29:03.831889Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.832152Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.832286Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.833070Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.833615Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.837884Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:29:03.839407Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:29:03.840718Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:29:03.866590Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.866662Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.866888Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.867275Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.870397Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.870812Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:29:03.896154Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:29:03.902303Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.902362Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.902532Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.905352Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:29:03.934589Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:06.253702Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:29:14.556995Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:29:14.556995Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] 
[2026-06-05T03:29:14.556995Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:29:14.557062Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] 
[2026-06-05T03:29:14.557075Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:29:14.557082Z] [nf-31ee0d1b137262523aaeece8afc70a4c-86189-csq46] [660_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec