cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.0s, est remaining 0.8s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 2083
progress 10% @chr2:19969480, elapsed 0.1s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 2469
progress 15% @chr2:189057320, elapsed 0.1s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 12867
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 6659
progress 25% @chr4:88436905, elapsed 0.2s, est remaining 0.7s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 16929
progress 30% @chr5:147383890, elapsed 0.3s, est remaining 0.7s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 26969
progress 35% @chr6:127515514, elapsed 0.4s, est remaining 0.7s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 36928
progress 40% @chr7:128754262, elapsed 0.4s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 46406
progress 45% @chr9:433875, elapsed 0.5s, est remaining 0.6s, peak mem 301MB, user 0.0s, sys 0.1s, output queue size 7260
progress 50% @chr10:32287098, elapsed 0.5s, est remaining 0.5s, peak mem 301MB, user 0.0s, sys 0.1s, output queue size 17207
progress 55% @chr11:48488793, elapsed 0.6s, est remaining 0.5s, peak mem 301MB, user 0.0s, sys 0.1s, output queue size 27672
progress 60% @chr12:21765723, elapsed 0.7s, est remaining 0.4s, peak mem 301MB, user 0.0s, sys 0.1s, output queue size 37222
progress 65% @chr13:49220338, elapsed 0.7s, est remaining 0.4s, peak mem 301MB, user 0.0s, sys 0.1s, output queue size 48269
progress 70% @chr15:42424834, elapsed 0.8s, est remaining 0.3s, peak mem 301MB, user 0.0s, sys 0.1s, output queue size 58306
progress 75% @chr16:30737049, elapsed 0.8s, est remaining 0.3s, peak mem 301MB, user 0.0s, sys 0.1s, output queue size 67876
progress 80% @chr17:42553124, elapsed 0.9s, est remaining 0.2s, peak mem 301MB, user 0.0s, sys 0.1s, output queue size 78560
progress 85% @chr19:5648989, elapsed 0.9s, est remaining 0.2s, peak mem 319MB, user 0.0s, sys 0.1s, output queue size 88981
progress 90% @chr19:55762598, elapsed 1.0s, est remaining 0.1s, peak mem 319MB, user 0.0s, sys 0.1s, output queue size 98474
progress 95% @chr22:37011027, elapsed 1.4s, est remaining 0.1s, peak mem 2500MB, user 6.9s, sys 3.2s, output queue size 3224
progress 100% @chrY:57190197, elapsed 1.4s, est remaining 0.0s, peak mem 2500MB, user 7.0s, sys 3.2s, output queue size 2273
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 51395343
reads: 1001089
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2.009 user 0.091 sys 2.371 real
done: 1 calls 0.247 user 0.099 sys 0.356 real
execute: 1 calls 0.011 user 0.000 sys 1.428 real
fetch_reads: 208647 calls 0.108 user 0.001 sys 0.172 real
fetch_ref: 2042 calls 0.024 user 0.004 sys 0.025 real
fetch_vcf: 2042 calls 0.991 user 0.053 sys 1.019 real
idle: 92 calls 0.002 user 0.001 sys 31.639 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2207 calls 4.329 user 3.014 sys 7.975 real
overall: 2622193664 mem 10.793 user 14.525 sys 2.805 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory