File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/e5cda74d2d4a93ebc5679b9292ba87/.command.log
Size
61.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/e5cda74d2d4a93ebc5679b9292ba87/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/e5cda74d2d4a93ebc5679b9292ba87/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/43822faf2c2779416cb601556825c7/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/43822faf2c2779416cb601556825c7/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T03:28:45.336094Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:45.336952Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:45.336967Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:45.336972Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:45.336977Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXka0NMe'
[2026-06-05T03:28:45.336982Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:45.336988Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:45.336992Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:45.336997Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] [RunParameters] memMb: 1547789
[2026-06-05T03:28:45.337001Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:45.337006Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:45.337010Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:45.337014Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:45.337018Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:45.338083Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:45.338179Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:45.344734Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:45.345678Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:45.345952Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:45.346287Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.346940Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:45.347451Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.347661Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.347744Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.348059Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.348470Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.348620Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.349082Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.349485Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.349742Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.352076Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.352344Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.352490Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.352594Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:45.352901Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.353315Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.353460Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.353528Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.353700Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.353771Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.353998Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.354066Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.354207Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.354276Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.354629Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.354860Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.355325Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.355450Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.355570Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.355643Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.355758Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.355877Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.356005Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.356196Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.356713Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.356785Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.356927Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.356992Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.357149Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.357211Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.357330Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.357390Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.357508Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.357574Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.357818Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.358354Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.358567Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.358737Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.358866Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.358937Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.359051Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.359118Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.359246Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.359315Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.359837Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.360263Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.360392Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.360458Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.360579Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.360643Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.360761Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.360832Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.360947Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.361013Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.377588Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.377863Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.377938Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.378130Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.378205Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.378292Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.378366Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.378481Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.378556Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:45.378610Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:45.389055Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.389750Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.390474Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.392863Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.393115Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T03:28:45.393429Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.394176Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.394974Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.395907Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.396621Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.404508Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T03:28:45.404947Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T03:28:45.408072Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T03:28:45.411964Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T03:28:45.413750Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T03:28:45.415912Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T03:28:45.417475Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T03:28:45.515065Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.515169Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.515199Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.516009Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.516825Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.517150Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.522726Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T03:28:45.524597Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T03:28:45.526033Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T03:28:45.585341Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.586227Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.591100Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T03:28:46.103657Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.103756Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.104555Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.105323Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.108535Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T03:28:46.109673Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T03:28:46.171191Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.171294Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.172067Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.172820Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.176452Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T03:28:46.177011Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T03:28:46.288821Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.289690Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.293096Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T03:28:46.454861Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.455682Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.459619Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T03:28:46.520758Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.521596Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.524758Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.525585Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.525853Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T03:28:46.529108Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T03:28:46.591653Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.591794Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.592716Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.593068Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.597869Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T03:28:46.598984Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T03:28:46.707646Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.708514Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.712341Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T03:28:46.741389Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.742181Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.745749Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T03:28:46.807114Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.807926Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.811722Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T03:28:46.872539Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.873354Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.878105Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T03:28:47.389532Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.389666Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.389702Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.390330Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.392835Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.393491Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.394471Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T03:28:47.397818Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T03:28:47.398968Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.400119Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.400500Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T03:28:47.403374Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T03:28:47.404321Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.405115Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.408389Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T03:28:47.437125Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.437858Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.441365Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T03:28:47.470473Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.470604Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.471255Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.472170Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.476629Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T03:28:47.478360Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T03:28:47.539093Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.539227Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.539947Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.540831Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.545099Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T03:28:47.546470Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T03:28:47.550908Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.551704Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.555679Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T03:28:47.584468Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.585711Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.586512Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.587463Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.590734Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T03:28:47.591932Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T03:28:47.651846Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.652545Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.656309Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T03:28:47.717472Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.718225Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.721531Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T03:28:47.782812Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.783622Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.787415Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T03:28:47.848397Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.849137Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.852817Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T03:28:47.913959Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.914661Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.918161Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T03:28:47.947382Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.948041Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.951227Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T03:28:48.012560Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.012675Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.013268Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.013619Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.017755Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T03:28:48.018738Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T03:28:48.078708Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.079370Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.082925Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T03:28:48.194451Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.195095Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.199341Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T03:28:48.260346Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.261016Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.264828Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T03:28:48.325657Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.325757Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.326324Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.326947Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.330715Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T03:28:48.331973Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T03:28:48.391663Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.392359Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.395529Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T03:28:48.456959Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.457563Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.461255Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T03:28:48.461881Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.462482Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.465340Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T03:28:48.526655Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.526779Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.527389Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.527776Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.531264Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T03:28:48.532443Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T03:28:48.592329Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.592456Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.706702Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.707249Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.711356Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T03:28:48.771804Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.136864Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.136965Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.137440Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.138205Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.142203Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T03:28:49.147472Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.147958Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.151163Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T03:28:49.180680Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T03:28:49.212351Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.212460Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.212487Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.212507Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.212988Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.216182Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T03:28:49.277339Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.492080Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.492549Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.496121Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T03:28:49.557515Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.557832Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.558090Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.558760Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.559563Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.563353Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:28:49.566129Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:28:49.592385Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:28:49.593921Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.594301Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.595088Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.597670Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.598394Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.600170Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:28:49.601345Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:28:49.631097Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.632512Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.632777Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.635967Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:28:49.697645Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.015463Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:28:55.890382Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:28:55.890382Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] 
[2026-06-05T03:28:55.890382Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:28:55.890439Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] 
[2026-06-05T03:28:55.890445Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:28:55.890451Z] [nf-2ae5cda74d2d4a93ebc5679b9292ba87-2894c-xrz78] [605_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec