cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:143000001, elapsed 0.3s, est remaining 5.1s, peak mem 295MB, user 0.5s, sys 6.5s, output queue size 24
progress 10% @chr2:98000001, elapsed 0.5s, est remaining 4.5s, peak mem 493MB, user 1.1s, sys 12.9s, output queue size 50
progress 15% @chr3:18000001, elapsed 0.7s, est remaining 4.1s, peak mem 601MB, user 1.6s, sys 19.5s, output queue size 47
progress 20% @chr3:139000001, elapsed 0.9s, est remaining 3.8s, peak mem 682MB, user 1.8s, sys 26.1s, output queue size 18
progress 25% @chr4:102000001, elapsed 1.2s, est remaining 3.5s, peak mem 778MB, user 2.3s, sys 32.6s, output queue size 20
progress 30% @chr5:107000001, elapsed 1.4s, est remaining 3.3s, peak mem 862MB, user 2.6s, sys 39.3s, output queue size 38
progress 35% @chr6:45000001, elapsed 1.6s, est remaining 3.0s, peak mem 910MB, user 3.1s, sys 46.0s, output queue size 20
progress 40% @chr7:39000001, elapsed 1.9s, est remaining 2.8s, peak mem 967MB, user 3.5s, sys 52.8s, output queue size 20
progress 45% @chr8:39000001, elapsed 2.1s, est remaining 2.6s, peak mem 1030MB, user 3.8s, sys 59.6s, output queue size 65
progress 50% @chr9:97000001, elapsed 2.3s, est remaining 2.3s, peak mem 1087MB, user 4.2s, sys 66.5s, output queue size 40
progress 55% @chr10:114000001, elapsed 2.6s, est remaining 2.1s, peak mem 1138MB, user 4.7s, sys 73.5s, output queue size 44
progress 60% @chr11:108000001, elapsed 2.8s, est remaining 1.9s, peak mem 1177MB, user 5.1s, sys 80.4s, output queue size 21
progress 65% @chr13:7000001, elapsed 3.0s, est remaining 1.6s, peak mem 1225MB, user 5.4s, sys 87.2s, output queue size 26
progress 70% @chr14:49000001, elapsed 3.3s, est remaining 1.4s, peak mem 1300MB, user 5.8s, sys 94.4s, output queue size 12
progress 75% @chr16:2000001, elapsed 3.5s, est remaining 1.2s, peak mem 1366MB, user 6.1s, sys 101.0s, output queue size 19
progress 80% @chr17:68000001, elapsed 3.7s, est remaining 0.9s, peak mem 1408MB, user 6.4s, sys 107.9s, output queue size 35
progress 85% @chr20:14000001, elapsed 4.0s, est remaining 0.7s, peak mem 1438MB, user 6.8s, sys 114.6s, output queue size 9
progress 90% @chrX:42000001, elapsed 4.4s, est remaining 0.5s, peak mem 2764MB, user 10.1s, sys 118.0s, output queue size 114
progress 95% @chrY:35000001, elapsed 4.6s, est remaining 0.2s, peak mem 2788MB, user 14.0s, sys 121.3s, output queue size 276
progress 100% @chr21:41000001, elapsed 6.7s, est remaining 0.0s, peak mem 2800MB, user 26.1s, sys 125.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52290594
output file size: 74586799
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.004 user 0.029 sys 0.039 real
ReadQualCal::delayed_init: 1 calls 0.005 user 0.000 sys 0.037 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1.646 user 15.945 sys 17.117 real
done: 1 calls 0.275 user 0.322 sys 0.599 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.007 user 0.001 sys 6.790 real
fetch: 3219322 calls 0.289 user 15.751 sys 13.953 real
fetch_reads: 3219322 calls 0.406 user 15.751 sys 14.038 real
fetch_ref: 13318 calls 0.030 user 0.016 sys 0.072 real
fetch_vcf: 13318 calls 1.280 user 0.141 sys 1.472 real
idle: 1543 calls 0.828 user 0.302 sys 84.082 real
init: 1 calls 0.005 user 0.000 sys 0.043 real
update: 13537 calls 7.264 user 1.567 sys 9.357 real
write: 3219322 calls 9.263 user 16.704 sys 24.871 real
overall: 2936541184 mem 29.613 user 127.128 sys 8.139 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.020 user 0.000 sys 0.027 real
done: 1 calls 0.040 user 0.020 sys 0.058 real
idle: 61 calls 0.002 user 0.000 sys 31.347 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81944576 mem 0.068 user 0.045 sys 1.057 real