Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/77a3c816928cf056a2a709ea29f531/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/ddfa9876d8a83be150a3fdd6511216/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/ddfa9876d8a83be150a3fdd6511216/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-62m70e4c because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 03:33:29,474 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 03:33:30,298 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 03:33:30,472 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 03:33:31,427 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 03:33:31,601 - cnv_pipe.batch.run_model - INFO - Processing cluster 957 with 180 probes
2026-06-05 03:33:31,988 - cnv_pipe.batch.run_model.cluster957 - INFO - Child process started for cluster 957 with 180 probes
2026-06-05 03:34:25,367 - cnv_pipe.batch.run_model.cluster957 - INFO - Child process finished cluster 957. Wrote cluster_957_samples.csv and cluster_957_params.csv
2026-06-05 03:34:25,368 - cnv_pipe.batch.run_model - INFO - Cluster 957 finished in 53.77 seconds. Status: SUCCESS