[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXl1ZWfA/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXl1ZWfA/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXl1ZWfA/chr19_15162349-15162662.bed.gz.tbi
[2026-06-05T03:28:44.490010Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:44.491549Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:44.491583Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:44.491589Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:44.491594Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXl1ZWfA'
[2026-06-05T03:28:44.491598Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:44.491606Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:44.491610Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:44.491614Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] [RunParameters] memMb: 1547789
[2026-06-05T03:28:44.491618Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:44.491622Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:44.491627Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:44.491630Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:44.491634Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:44.492360Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:44.492486Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:44.498332Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:44.499057Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:44.499587Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:44.499758Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:44.500066Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.500426Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.500519Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.500591Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.500713Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.500780Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.500900Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.500963Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.501080Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.501354Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.501716Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.501883Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.502248Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.503059Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.505599Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.505926Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:44.506441Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.506999Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.507181Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.507255Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.507371Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.507511Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.507624Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.507700Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.507951Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.508723Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.508923Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.509011Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.509137Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.509206Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.509320Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.509420Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.509854Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.510159Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.510284Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.510349Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.510459Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.510524Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.510641Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.510703Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.510812Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.510872Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.510980Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.511045Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.512118Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.512414Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.512528Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.512595Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.512768Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.512835Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.512945Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.513008Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.513121Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.513182Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.513303Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.513364Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.514163Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.514354Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.514528Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.514602Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.514722Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.514787Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.514901Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.514965Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.515085Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.515312Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.531614Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.531713Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.531783Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.531944Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.532015Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.532107Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.532171Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.532277Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.532350Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.533986Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:44.538576Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.539215Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.539543Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.540274Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.540724Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.541673Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.544400Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T03:28:44.544705Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.546195Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.550116Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T03:28:44.551143Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T03:28:44.551492Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.554711Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T03:28:44.560382Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T03:28:44.560769Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T03:28:44.564290Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T03:28:44.670281Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.670393Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.671481Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.671895Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.677130Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T03:28:44.679716Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T03:28:46.044279Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.045103Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.049243Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T03:28:46.061709Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.062546Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.066060Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-05T03:28:46.127138Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.128018Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.131734Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T03:28:46.243042Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.243955Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.247479Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T03:28:46.308611Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.309514Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.312886Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T03:28:46.374133Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.375044Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.379077Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T03:28:46.384265Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T03:28:46.391944Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.392039Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.392822Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.393235Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.396962Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-05T03:28:46.398086Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T03:28:46.458333Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.458470Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.459304Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.460013Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.465203Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T03:28:46.466687Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-05T03:28:46.526493Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.526608Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.527392Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.528029Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.531951Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-05T03:28:46.534065Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T03:28:46.594627Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.595331Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.598655Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-05T03:28:46.660221Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.661053Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.664558Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-05T03:28:46.726145Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.726244Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.726964Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.727797Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.731558Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-05T03:28:46.732699Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T03:28:46.792985Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.793084Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.793882Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.794698Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.799135Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T03:28:46.800841Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T03:28:47.012625Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.013429Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.017136Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-05T03:28:47.078132Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.078906Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.082741Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T03:28:47.645328Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.646110Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.650213Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T03:28:47.654605Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.655279Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.659135Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-05T03:28:47.720171Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.720944Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.725058Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T03:28:47.886212Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.886925Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.890445Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-05T03:28:47.951661Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.951760Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.952440Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.952838Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.956986Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T03:28:47.958143Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T03:28:48.119447Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.120185Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.124470Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-05T03:28:48.185503Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.186239Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.189741Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-05T03:28:48.194788Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.195387Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.198833Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T03:28:48.227860Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.228553Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.232074Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T03:28:48.444023Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.444714Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.448301Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-05T03:28:48.509338Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.509988Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.513867Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T03:28:48.625016Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.625660Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.629393Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T03:28:48.690645Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.690769Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.691373Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.691823Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.695414Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-05T03:28:48.696843Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-05T03:28:48.756485Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.756593Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.757236Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.757888Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.762611Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T03:28:48.764501Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-05T03:28:48.823963Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.824081Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.824694Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.825029Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.829367Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-05T03:28:48.830838Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T03:28:48.890759Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.891428Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.895174Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T03:28:48.956613Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.957276Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.961166Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T03:28:49.673676Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.674315Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.678082Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-05T03:28:49.739300Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.740002Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.743643Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-05T03:28:49.804889Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.805533Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.809185Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T03:28:50.020836Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.021507Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.025171Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-05T03:28:50.086220Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.086842Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.089991Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T03:28:50.151432Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.152141Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.155992Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-05T03:28:50.216960Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.217578Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.221307Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-05T03:28:50.282329Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.396962Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.397552Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.401252Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-05T03:28:50.401771Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.402224Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.405283Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T03:28:50.466772Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.466858Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.581384Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.581967Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.586230Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-05T03:28:50.590562Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.591083Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.594252Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-05T03:28:50.655674Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.655785Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.171410Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.171969Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.175788Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-05T03:28:51.236625Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.952548Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.953117Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.956495Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-05T03:28:52.017776Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.482920Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.483437Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.486797Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T03:28:52.547756Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.548026Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.548170Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.548893Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.551436Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.552027Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:28:52.555291Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:28:52.556938Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:28:52.583952Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.584033Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.584275Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.585115Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.588655Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.589099Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:28:52.589577Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:28:52.620424Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.620515Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.620703Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.622860Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:28:52.653628Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.072734Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:29:03.380293Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:29:03.380293Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] 
[2026-06-05T03:29:03.380293Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:29:03.380363Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] 
[2026-06-05T03:29:03.380372Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:29:03.380380Z] [nf-20bd765a9a04b8bf382fefdcc17da10d-3b48b-kshjq] [592_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec