File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/c75e37247e5d65cd5734dfc8c0dc39/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-rmymgjla because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 03:34:00,703 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 03:34:01,495 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 03:34:01,661 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 03:34:02,739 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 03:34:02,814 - cnv_pipe.batch.run_model - INFO - Processing cluster 1213 with 181 probes
2026-06-05 03:34:03,199 - cnv_pipe.batch.run_model.cluster1213 - INFO - Child process started for cluster 1213 with 181 probes
2026-06-05 03:34:57,203 - cnv_pipe.batch.run_model.cluster1213 - INFO - Child process finished cluster 1213. Wrote cluster_1213_samples.csv and cluster_1213_params.csv
2026-06-05 03:34:57,204 - cnv_pipe.batch.run_model - INFO - Cluster 1213 finished in 54.39 seconds. Status: SUCCESS