Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/77a3c816928cf056a2a709ea29f531/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/8cd8c9f0124e316bd2e05698fa9e81/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/8cd8c9f0124e316bd2e05698fa9e81/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-t_ovqzqm because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 03:34:22,387 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 03:34:23,211 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 03:34:23,389 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 03:34:24,434 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 03:34:24,518 - cnv_pipe.batch.run_model - INFO - Processing cluster 1385 with 190 probes
2026-06-05 03:34:24,986 - cnv_pipe.batch.run_model.cluster1385 - INFO - Child process started for cluster 1385 with 190 probes
2026-06-05 03:35:20,849 - cnv_pipe.batch.run_model.cluster1385 - INFO - Child process finished cluster 1385. Wrote cluster_1385_samples.csv and cluster_1385_params.csv
2026-06-05 03:35:20,850 - cnv_pipe.batch.run_model - INFO - Cluster 1385 finished in 56.33 seconds. Status: SUCCESS