Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/77a3c816928cf056a2a709ea29f531/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/e37072ee6bbddfe909019dfabf4c81/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/e37072ee6bbddfe909019dfabf4c81/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-wgod9070 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 03:32:28,395 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 03:32:29,257 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 03:32:29,434 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 03:32:30,452 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 03:32:30,528 - cnv_pipe.batch.run_model - INFO - Processing cluster 620 with 179 probes
2026-06-05 03:32:31,002 - cnv_pipe.batch.run_model.cluster620 - INFO - Child process started for cluster 620 with 179 probes
2026-06-05 03:33:25,759 - cnv_pipe.batch.run_model.cluster620 - INFO - Child process finished cluster 620. Wrote cluster_620_samples.csv and cluster_620_params.csv
2026-06-05 03:33:25,761 - cnv_pipe.batch.run_model - INFO - Cluster 620 finished in 55.23 seconds. Status: SUCCESS