cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --read_filter QualCalFilter,table=HCC1395_BL.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table.post --algo ReadWriter HCC1395_BL.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.1s, est remaining 2.1s, peak mem 332MB, user 0.4s, sys 2.5s, output queue size 15
progress 10% @chr2:75000001, elapsed 0.2s, est remaining 1.8s, peak mem 509MB, user 0.6s, sys 5.0s, output queue size 41
progress 15% @chr2:209000001, elapsed 0.3s, est remaining 1.6s, peak mem 611MB, user 0.9s, sys 7.4s, output queue size 26
progress 20% @chr3:150000001, elapsed 0.4s, est remaining 1.8s, peak mem 719MB, user 1.3s, sys 11.8s, output queue size 18
progress 25% @chr4:140000001, elapsed 0.6s, est remaining 1.9s, peak mem 818MB, user 1.7s, sys 16.6s, output queue size 18
progress 30% @chr5:78000001, elapsed 0.8s, est remaining 1.8s, peak mem 854MB, user 2.1s, sys 21.6s, output queue size 26
progress 35% @chr6:60000001, elapsed 1.0s, est remaining 1.8s, peak mem 962MB, user 2.6s, sys 26.3s, output queue size 13
progress 40% @chr7:77000001, elapsed 1.2s, est remaining 1.8s, peak mem 1007MB, user 3.1s, sys 32.0s, output queue size 42
progress 45% @chr8:37000001, elapsed 1.4s, est remaining 1.7s, peak mem 1109MB, user 3.5s, sys 38.8s, output queue size 20
progress 50% @chr9:72000001, elapsed 1.6s, est remaining 1.6s, peak mem 1181MB, user 3.8s, sys 45.6s, output queue size 29
progress 55% @chr10:89000001, elapsed 1.9s, est remaining 1.5s, peak mem 1205MB, user 4.1s, sys 52.4s, output queue size 26
progress 60% @chr12:11000001, elapsed 2.1s, est remaining 1.4s, peak mem 1235MB, user 4.4s, sys 59.1s, output queue size 29
progress 65% @chr12:115000001, elapsed 2.3s, est remaining 1.2s, peak mem 1262MB, user 4.8s, sys 65.9s, output queue size 34
progress 70% @chr14:56000001, elapsed 2.6s, est remaining 1.1s, peak mem 1328MB, user 5.2s, sys 72.8s, output queue size 23
progress 75% @chr16:33000001, elapsed 2.8s, est remaining 0.9s, peak mem 1406MB, user 5.6s, sys 80.2s, output queue size 12
progress 80% @chr17:74000001, elapsed 3.1s, est remaining 0.8s, peak mem 1451MB, user 5.9s, sys 87.8s, output queue size 17
progress 85% @chr20:15000001, elapsed 3.3s, est remaining 0.6s, peak mem 1541MB, user 6.3s, sys 95.3s, output queue size 10
progress 90% @chrX:43000001, elapsed 3.7s, est remaining 0.4s, peak mem 2738MB, user 9.3s, sys 99.1s, output queue size 114
progress 95% @chrY:50000001, elapsed 4.0s, est remaining 0.2s, peak mem 2759MB, user 12.9s, sys 102.4s, output queue size 276
progress 100% @chr21:41000001, elapsed 6.0s, est remaining 0.0s, peak mem 2777MB, user 24.3s, sys 107.3s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 51395343
output file size: 71692759
reads: 1001089
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.002 sys 0.023 real
ReadQualCal::delayed_init: 1 calls 0.003 user 0.001 sys 0.030 real
ReadQualCal::init: 1 calls 0.008 user 0.002 sys 0.006 real
advance: 3219322 calls 1.881 user 13.958 sys 15.664 real
done: 1 calls 0.308 user 0.320 sys 0.632 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.000 user 0.008 sys 6.051 real
fetch: 3219322 calls 0.375 user 13.091 sys 13.210 real
fetch_reads: 3219322 calls 0.480 user 12.661 sys 13.327 real
fetch_ref: 13103 calls 0.066 user 0.081 sys 0.087 real
fetch_vcf: 13103 calls 1.286 user 0.115 sys 1.568 real
idle: 1638 calls 0.664 user 0.377 sys 81.290 real
init: 1 calls 0.003 user 0.001 sys 0.036 real
update: 13298 calls 6.085 user 1.563 sys 8.666 real
write: 3219322 calls 8.584 user 13.199 sys 21.970 real
overall: 2915704832 mem 27.486 user 108.939 sys 7.404 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before HCC1395_BL.table --after HCC1395_BL.table.post HCC1395_BL.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.019 user 0.001 sys 0.025 real
done: 1 calls 0.038 user 0.012 sys 0.055 real
idle: 61 calls 0.002 user 0.000 sys 31.317 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81891328 mem 0.067 user 0.044 sys 1.058 real