cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --algo AlignmentStat HCC1395_tumor.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo HCC1395_tumor.sentieon.insert_size_metrics --algo QualDistribution HCC1395_tumor.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle HCC1395_tumor.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle HCC1395_tumor.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:165000001, elapsed 0.0s, est remaining 0.7s, peak mem 78MB, user 0.1s, sys 0.6s, output queue size 10
progress 10% @chr2:68000001, elapsed 0.1s, est remaining 0.6s, peak mem 78MB, user 0.2s, sys 1.5s, output queue size 7
progress 15% @chr2:219000001, elapsed 0.1s, est remaining 0.5s, peak mem 78MB, user 0.3s, sys 2.3s, output queue size 16
progress 20% @chr3:157000001, elapsed 0.1s, est remaining 0.5s, peak mem 78MB, user 0.4s, sys 3.1s, output queue size 4
progress 25% @chr4:112000001, elapsed 0.2s, est remaining 0.5s, peak mem 78MB, user 0.4s, sys 4.0s, output queue size 10
progress 30% @chr5:90000001, elapsed 0.2s, est remaining 0.4s, peak mem 78MB, user 0.5s, sys 4.8s, output queue size 5
progress 35% @chr6:67000001, elapsed 0.2s, est remaining 0.4s, peak mem 78MB, user 0.6s, sys 5.6s, output queue size 3
progress 40% @chr7:57000001, elapsed 0.2s, est remaining 0.4s, peak mem 78MB, user 0.7s, sys 6.5s, output queue size 5
progress 45% @chr8:47000001, elapsed 0.3s, est remaining 0.3s, peak mem 78MB, user 0.8s, sys 7.3s, output queue size 10
progress 50% @chr9:73000001, elapsed 0.3s, est remaining 0.3s, peak mem 78MB, user 0.9s, sys 8.2s, output queue size 9
progress 55% @chr10:93000001, elapsed 0.3s, est remaining 0.3s, peak mem 78MB, user 0.9s, sys 9.1s, output queue size 3
progress 60% @chr11:122000001, elapsed 0.4s, est remaining 0.2s, peak mem 78MB, user 1.0s, sys 10.0s, output queue size 2
progress 65% @chr13:15000001, elapsed 0.4s, est remaining 0.2s, peak mem 78MB, user 1.1s, sys 10.9s, output queue size 5
progress 70% @chr14:60000001, elapsed 0.4s, est remaining 0.2s, peak mem 78MB, user 1.1s, sys 11.8s, output queue size 2
progress 75% @chr16:14000001, elapsed 0.5s, est remaining 0.2s, peak mem 78MB, user 1.2s, sys 12.6s, output queue size 11
progress 80% @chr17:78000001, elapsed 0.5s, est remaining 0.1s, peak mem 78MB, user 1.3s, sys 13.3s, output queue size 8
progress 85% @chr20:17000001, elapsed 0.5s, est remaining 0.1s, peak mem 78MB, user 1.4s, sys 14.2s, output queue size 5
progress 90% @chrX:42000001, elapsed 0.6s, est remaining 0.1s, peak mem 90MB, user 1.9s, sys 14.5s, output queue size 114
progress 95% @chrY:38000001, elapsed 0.6s, est remaining 0.0s, peak mem 102MB, user 2.7s, sys 14.8s, output queue size 276
progress 100% @chr21:41000001, elapsed 1.3s, est remaining 0.0s, peak mem 126MB, user 5.6s, sys 15.4s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 50813895
reads: 1001320
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.592 user 7.341 sys 9.320 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.001 user 0.001 sys 1.355 real
idle: 80 calls 0.023 user 0.033 sys 50.394 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 132186112 mem 5.937 user 16.065 sys 2.405 real