Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/77a3c816928cf056a2a709ea29f531/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/7902d7fe908852159e7d136f96ba6e/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/49f483db26dc42d55ff59e3a2a8152/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/49f483db26dc42d55ff59e3a2a8152/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-n7e3d_7d because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-05 03:33:52,341 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-05 03:33:53,151 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-05 03:33:53,320 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-05 03:33:54,289 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-05 03:33:54,474 - cnv_pipe.batch.run_model - INFO - Processing cluster 1203 with 147 probes
2026-06-05 03:33:54,889 - cnv_pipe.batch.run_model.cluster1203 - INFO - Child process started for cluster 1203 with 147 probes
2026-06-05 03:34:40,725 - cnv_pipe.batch.run_model.cluster1203 - INFO - Child process finished cluster 1203. Wrote cluster_1203_samples.csv and cluster_1203_params.csv
2026-06-05 03:34:40,727 - cnv_pipe.batch.run_model - INFO - Cluster 1203 finished in 46.25 seconds. Status: SUCCESS