[2026-06-05T03:28:44.825552Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:44.826864Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:44.826894Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:44.826901Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:44.826906Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXt2HUDA'
[2026-06-05T03:28:44.826910Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:44.826915Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:44.826919Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:44.826923Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] [RunParameters] memMb: 1547789
[2026-06-05T03:28:44.826926Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:44.826930Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:44.826934Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:44.826938Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:44.826942Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:44.828063Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:44.828136Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:44.834325Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:44.835195Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:44.835642Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:44.835994Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:44.836351Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.837209Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.837306Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.837382Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.837748Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.838342Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.838600Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.838984Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.841136Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.841581Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:44.842365Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.842973Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.843158Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.843227Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.843342Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.843407Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.843522Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.843605Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.843729Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.843790Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.846983Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.847110Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.847250Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.847319Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.847434Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.847497Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.847623Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.847685Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.847795Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.847858Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.847967Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.848113Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.848527Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.849339Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.849951Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.850020Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.850133Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.850197Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.850307Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.850368Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.850481Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.850544Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.850659Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.850721Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.850827Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.851197Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.851846Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.851917Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.852103Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.852168Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.852281Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.852344Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.852455Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.852523Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.852633Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.852692Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.852927Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.853934Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.854056Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.854175Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.854291Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.854352Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.854470Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.854534Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.854648Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.854714Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.854824Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.854890Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.855418Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.856239Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.856356Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.856420Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.856531Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.856594Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.858944Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.859766Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.859899Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.859969Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.860079Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.860142Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.860252Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.860314Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.860429Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.860493Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.860607Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.860675Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.860817Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.861259Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.862356Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.862425Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.862538Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.862648Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.862769Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.862832Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.862949Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.863010Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.863126Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.863187Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.874955Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.879295Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.880551Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.881614Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.882429Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.883219Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.884426Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.885690Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.886519Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.890533Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.892252Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.895611Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.896571Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0002] Task initiated on local node
[2026-06-05T03:28:44.902225Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0007] Task initiated on local node
[2026-06-05T03:28:44.902884Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.906390Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0009] Task initiated on local node
[2026-06-05T03:28:44.910891Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T03:28:44.919126Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T03:28:44.919658Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.920775Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T03:28:44.921533Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T03:28:44.921739Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T03:28:44.922021Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.922268Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.924703Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.925341Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:44.925486Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:44.990338Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.991817Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.995189Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T03:28:45.008135Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.009781Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.012999Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0007] Task initiated on local node
[2026-06-05T03:28:45.074400Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.074508Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.075942Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.076628Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.080253Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T03:28:45.081721Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0000] Task initiated on local node
[2026-06-05T03:28:45.141254Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.143267Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.143850Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.146969Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.148444Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0001] Task initiated on local node
[2026-06-05T03:28:45.151168Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T03:28:45.261957Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.263447Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.266832Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T03:28:45.378221Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.379612Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.382770Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T03:28:45.443987Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.445747Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.449909Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0005] Task initiated on local node
[2026-06-05T03:28:46.162118Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.163283Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.166753Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T03:28:46.278202Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.279383Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.282993Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0004] Task initiated on local node
[2026-06-05T03:28:46.394182Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.395362Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.399619Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0002] Task initiated on local node
[2026-06-05T03:28:46.810985Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.812074Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.815466Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T03:28:46.877097Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.877200Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.878336Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.879010Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.883187Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0004] Task initiated on local node
[2026-06-05T03:28:46.884183Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0006] Task initiated on local node
[2026-06-05T03:28:46.997107Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.998413Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.001811Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0006] Task initiated on local node
[2026-06-05T03:28:47.163539Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.164674Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.168182Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0007] Task initiated on local node
[2026-06-05T03:28:47.229693Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.230833Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.234353Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T03:28:47.295262Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.296215Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.299838Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T03:28:47.360953Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.362085Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.365726Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0006] Task initiated on local node
[2026-06-05T03:28:47.527494Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.528615Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.531980Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T03:28:47.593240Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.594463Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.598298Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0002] Task initiated on local node
[2026-06-05T03:28:47.659027Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.660102Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.664403Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T03:28:47.724945Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.725055Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.726094Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.726874Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.730697Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0004] Task initiated on local node
[2026-06-05T03:28:47.732303Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0001] Task initiated on local node
[2026-06-05T03:28:47.792163Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.793282Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.797299Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T03:28:47.858131Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.859246Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.862554Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0002] Task initiated on local node
[2026-06-05T03:28:47.974247Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.974345Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.975347Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.976061Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:47.980108Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0003] Task initiated on local node
[2026-06-05T03:28:47.981506Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0000] Task initiated on local node
[2026-06-05T03:28:48.041264Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.041373Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.042387Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.043131Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.046830Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0008] Task initiated on local node
[2026-06-05T03:28:48.048215Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0009] Task initiated on local node
[2026-06-05T03:28:48.108485Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.109513Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.112596Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0003] Task initiated on local node
[2026-06-05T03:28:48.525037Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.526104Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.529236Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T03:28:48.590654Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.590795Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.591757Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.593919Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.595317Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0004] Task initiated on local node
[2026-06-05T03:28:48.598194Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0003] Task initiated on local node
[2026-06-05T03:28:48.659657Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.660682Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:48.664170Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0005] Task initiated on local node
[2026-06-05T03:28:49.025972Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.026943Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.030072Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0005] Task initiated on local node
[2026-06-05T03:28:49.091393Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.091516Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.092455Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.092752Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.095781Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0002] Task initiated on local node
[2026-06-05T03:28:49.137031Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T03:28:49.158041Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.158178Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.159072Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.161260Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.162380Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T03:28:49.164995Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0007] Task initiated on local node
[2026-06-05T03:28:49.226303Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.227219Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.230547Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T03:28:49.291995Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.292964Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.296686Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0005] Task initiated on local node
[2026-06-05T03:28:49.357558Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.358530Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.361690Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0007] Task initiated on local node
[2026-06-05T03:28:49.423113Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.424243Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.427856Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0000] Task initiated on local node
[2026-06-05T03:28:49.488896Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.489000Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.489879Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.490622Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.494341Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0006] Task initiated on local node
[2026-06-05T03:28:49.495743Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T03:28:49.506986Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.507864Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.511976Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T03:28:49.524216Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.525108Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.528591Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0000] Task initiated on local node
[2026-06-05T03:28:49.529348Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.530069Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.533850Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0004] Task initiated on local node
[2026-06-05T03:28:49.562589Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.563495Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.567752Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T03:28:49.596776Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.597638Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.601459Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0003] Task initiated on local node
[2026-06-05T03:28:49.662320Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.663238Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.667684Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0008] Task initiated on local node
[2026-06-05T03:28:49.878744Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.879611Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:49.883536Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0005] Task initiated on local node
[2026-06-05T03:28:50.195230Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.196276Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.200025Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T03:28:50.260731Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.260824Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.261819Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.262186Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.265686Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T03:28:50.267177Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T03:28:50.326663Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.326754Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.327870Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.328407Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.332052Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T03:28:50.333713Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T03:28:50.393640Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.393762Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.394535Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.395164Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.398623Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0000] Task initiated on local node
[2026-06-05T03:28:50.399698Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0006] Task initiated on local node
[2026-06-05T03:28:50.459690Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.459802Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.460559Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.461043Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.464516Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T03:28:50.466555Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T03:28:50.527570Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.527674Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.528422Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.528752Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.533043Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0000] Task initiated on local node
[2026-06-05T03:28:50.534198Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T03:28:50.538102Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.538726Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.542269Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0003] Task initiated on local node
[2026-06-05T03:28:50.603032Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.603153Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.603187Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.603957Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.604723Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.606793Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.607864Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T03:28:50.611167Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0003] Task initiated on local node
[2026-06-05T03:28:50.612338Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T03:28:50.673364Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.673477Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.674246Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.674918Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.678914Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T03:28:50.679819Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0008] Task initiated on local node
[2026-06-05T03:28:50.741257Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.741918Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.745524Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0008] Task initiated on local node
[2026-06-05T03:28:50.806798Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.807554Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.811491Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T03:28:50.873382Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.874404Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.874789Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.876592Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.878632Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0001] Task initiated on local node
[2026-06-05T03:28:50.880118Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0007] Task initiated on local node
[2026-06-05T03:28:50.941195Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.941300Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.941328Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.941971Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.942708Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.943033Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:50.947120Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0008] Task initiated on local node
[2026-06-05T03:28:50.949322Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T03:28:50.950895Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0002] Task initiated on local node
[2026-06-05T03:28:51.010103Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.010212Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.010238Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.010802Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.011322Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.011865Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.015828Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0006] Task initiated on local node
[2026-06-05T03:28:51.018170Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0001] Task initiated on local node
[2026-06-05T03:28:51.019556Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T03:28:51.078248Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.078331Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.078945Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.079709Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.083025Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T03:28:51.084145Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0001] Task initiated on local node
[2026-06-05T03:28:51.144088Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.144186Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.208594Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.209174Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.212656Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0001] Task initiated on local node
[2026-06-05T03:28:51.273884Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.338248Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.338846Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.341995Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T03:28:51.403544Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.467863Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.468454Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:51.471712Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0004] Task initiated on local node
[2026-06-05T03:28:51.532949Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.098614Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.099183Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.102480Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0005] Task initiated on local node
[2026-06-05T03:28:52.163733Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.195870Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.196391Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.199890Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0008] Task initiated on local node
[2026-06-05T03:28:52.260828Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.425374Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.425948Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.429499Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T03:28:52.491265Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.491586Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.491727Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.492435Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.493051Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.495244Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:28:52.498457Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:28:52.499208Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:28:52.528794Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.529066Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.532037Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:28:52.533175Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.533243Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.533437Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.536217Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:28:52.565478Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.566960Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.567178Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:52.570533Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:28:52.599941Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.470218Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:29:03.716343Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:29:03.716343Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] 
[2026-06-05T03:29:03.716343Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:29:03.716412Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] 
[2026-06-05T03:29:03.716419Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:29:03.716426Z] [nf-1f174f4830cee818fee9e18f915cb4e6-97a43-vdjrx] [619_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec