Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/27f8174f8f029c79cbbcc460787840/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/27f8174f8f029c79cbbcc460787840/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/43822faf2c2779416cb601556825c7/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/43822faf2c2779416cb601556825c7/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-05T03:28:55.112148Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:55.112674Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:55.112694Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:55.112702Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:55.112708Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXTl24zG'
[2026-06-05T03:28:55.112713Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:55.112718Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:55.112722Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:55.112726Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T03:28:55.112730Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:55.112734Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:55.112750Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:55.112756Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:55.112761Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:55.113239Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:55.113356Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:55.119198Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:55.119929Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:55.120063Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:55.120343Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:55.120606Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.121495Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.121587Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.121699Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.122270Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.122503Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.122714Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.123047Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.123518Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.124127Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.126462Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.127100Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:55.127171Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.127306Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.127873Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.127948Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.128062Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.128126Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.128239Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.128320Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.128503Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.128579Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.128692Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.128759Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.128935Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.129357Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.129489Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.129554Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.129665Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.129732Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.129842Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.129915Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.130024Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.130083Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.130194Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.130256Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.130365Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.130430Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.131055Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.131385Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.131588Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.131679Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.131834Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.131922Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.132069Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.132165Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.132364Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.132853Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.133330Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.133439Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.133655Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.133743Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.134007Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.134098Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.134282Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.134598Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.153438Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.154124Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.154223Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.154416Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.154509Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.154616Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.154716Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.154859Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.154946Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:55.155008Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:55.219545Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.220194Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.220576Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.221084Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.222066Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.222823Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.223500Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.226305Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.227383Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.232707Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T03:28:55.233014Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T03:28:55.237327Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T03:28:55.241568Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-05T03:28:55.244685Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T03:28:55.246661Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-05T03:28:55.248771Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-05T03:28:55.250499Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-05T03:28:55.347826Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.347921Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.347960Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.348714Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.349226Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.350127Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.357519Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-05T03:28:55.358905Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-05T03:28:55.361123Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T03:28:55.418324Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.419264Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.424438Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T03:28:56.437371Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.438087Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.441116Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-05T03:28:56.603134Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.603225Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.603989Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.604378Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.608285Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T03:28:56.669743Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.670649Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.674136Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-05T03:28:57.236656Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.237395Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.240917Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T03:28:57.302034Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.302775Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.305770Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-05T03:28:58.101864Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-05T03:28:58.119442Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.120105Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.123001Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-05T03:28:58.185864Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.186558Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.190152Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-05T03:28:58.251025Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.251706Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.255202Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-05T03:28:58.316087Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.316853Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.320015Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T03:28:58.381566Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.382257Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.385431Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-05T03:28:58.414777Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.415410Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.418574Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-05T03:28:58.479838Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.480546Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.483923Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-05T03:28:58.544882Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.545560Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.549688Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-05T03:28:59.111471Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.112188Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.116122Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-05T03:28:59.176976Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.177670Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.181159Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-05T03:28:59.242067Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.242701Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.246021Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-05T03:28:59.274842Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.275504Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.278713Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T03:28:59.279377Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.279854Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.282547Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-05T03:28:59.343919Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.344017Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.344585Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.344948Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.348447Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-05T03:28:59.349731Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T03:28:59.409530Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.410148Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.413248Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T03:28:59.442864Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.443435Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.446375Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-05T03:28:59.475575Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.476165Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.479363Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-05T03:28:59.480167Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.480640Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.483741Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-05T03:28:59.488418Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.488947Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.491846Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-05T03:28:59.521215Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.521315Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.521849Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.522204Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.525800Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-05T03:28:59.527575Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T03:28:59.530529Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.531054Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.534543Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-05T03:28:59.563432Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.564215Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.567520Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-05T03:28:59.628708Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.629301Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.632961Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T03:28:59.693887Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.694461Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.697465Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-05T03:28:59.758869Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.759458Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.762853Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-05T03:28:59.823658Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.823759Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.824331Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.824716Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.828330Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-05T03:28:59.860016Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-05T03:28:59.889119Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.889220Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.889696Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.890011Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.893078Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-05T03:28:59.893885Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-05T03:28:59.954431Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.954528Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.620519Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.621019Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.623971Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-05T03:29:00.685502Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.850185Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.850662Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.854108Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-05T03:29:00.914995Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.915076Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.915498Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.918333Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-05T03:29:00.980120Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.094643Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.095082Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.098189Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-05T03:29:01.159568Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.925287Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.925730Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.929423Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-05T03:29:01.990401Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.057498Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.057909Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.060590Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-05T03:29:03.089731Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.089962Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.090102Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.090451Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.090988Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.094499Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:29:03.095998Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:29:03.096805Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:29:03.124090Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.124134Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.124153Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.124325Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.125153Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.127552Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:29:03.128871Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:29:03.158084Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.158156Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.158327Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:29:03.160728Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:29:03.190203Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:05.709620Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:29:14.001077Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:29:14.001077Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] 
[2026-06-05T03:29:14.001077Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:29:14.001142Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] 
[2026-06-05T03:29:14.001152Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:29:14.001160Z] [nf-7e27f8174f8f029c79cbbcc460787840-b88db-9bvm8] [613_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec