File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/c9450735d513ac9d56dfe668bb6616/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-05T03:28:54.860679Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:54.861514Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:54.861525Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:54.861529Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:54.861534Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX5ZtTND'
[2026-06-05T03:28:54.861538Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:54.861544Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:54.861547Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:54.861551Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-05T03:28:54.861555Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:54.861558Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:54.861562Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:54.861568Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:54.861572Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:54.862216Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:54.862327Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:54.868133Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:54.868868Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:54.869310Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:54.869657Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:54.870103Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.870983Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.871088Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.871168Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.871403Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.871694Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.872034Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.872270Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.872376Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.872839Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.873392Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.873706Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.875662Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.876550Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:54.876813Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.877138Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.877269Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.877347Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.877466Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.877530Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.877719Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.877788Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.878034Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.878298Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.878736Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.878803Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.878926Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.878996Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.879106Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.879170Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.879280Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.879359Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.879470Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.879531Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.879644Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.879710Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.879890Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.880222Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.880965Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.881058Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.881168Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.881233Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.881350Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.881418Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.881527Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.881592Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.882044Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.882651Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.882773Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.882843Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.882955Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883021Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883137Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883198Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883308Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883368Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883478Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883546Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.883807Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.884337Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.884465Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.884528Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.884641Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.884733Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.884837Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.884928Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.885039Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.885099Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.885210Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.885300Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.885535Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.886119Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.886235Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.886305Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.905436Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.905868Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.906032Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.906128Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.906464Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.907393Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.907580Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.907856Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.907944Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.908063Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.908440Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.908705Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:54.909405Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:54.909584Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.910564Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.911350Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.912465Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.913664Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.914723Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:54.921980Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T03:28:54.923418Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T03:28:54.928272Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T03:28:54.935918Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T03:28:54.940188Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T03:28:54.940807Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T03:28:54.945081Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T03:28:54.946040Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T03:28:55.105946Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.106994Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.110900Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T03:28:55.773540Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.774670Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.778603Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T03:28:55.839790Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.840839Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:55.844733Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T03:28:56.507663Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.508638Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.513037Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T03:28:56.525506Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.526442Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.529739Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-05T03:28:56.591621Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.592655Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.596255Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T03:28:56.657446Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.658409Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.661893Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T03:28:56.723399Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.723501Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.724485Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.724909Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.728956Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-05T03:28:56.729817Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T03:28:56.791468Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.792527Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:56.796439Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T03:28:57.008391Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.009840Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.014531Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T03:28:57.042495Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.043785Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.047596Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-05T03:28:57.109067Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.109184Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.110310Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.110796Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.114857Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-05T03:28:57.116052Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T03:28:57.175848Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.175979Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.177176Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.177769Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.181429Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-05T03:28:57.182567Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T03:28:57.242471Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.244029Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.247805Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T03:28:57.359072Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.360231Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.363911Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-05T03:28:57.425458Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.426618Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.430420Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-05T03:28:57.491549Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.492738Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.496500Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T03:28:57.758292Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.759362Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.762944Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-05T03:28:57.824454Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.825654Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.829185Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-05T03:28:57.890655Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.891834Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:57.895254Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T03:28:58.106870Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.107964Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.111430Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T03:28:58.222912Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.223027Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.223060Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.223972Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.224505Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.225146Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.230517Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-05T03:28:58.231854Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-05T03:28:58.234456Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T03:28:58.292306Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.292428Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.293199Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.293575Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.297472Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-05T03:28:58.298878Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T03:28:58.359595Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.360476Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.364544Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-05T03:28:58.425450Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.426311Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.430080Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T03:28:58.491418Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.491535Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.492228Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.492657Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.497039Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-05T03:28:58.497950Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T03:28:58.557477Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.557591Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.558256Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.558892Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.562603Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-05T03:28:58.563796Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T03:28:58.623521Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.624445Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:58.628278Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T03:28:59.592319Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.593086Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.597300Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T03:28:59.809034Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.809778Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:59.813560Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T03:29:00.075188Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.075952Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.079608Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-05T03:29:00.140963Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.141749Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.145634Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T03:29:00.206451Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.207239Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.211183Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-05T03:29:00.271994Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.272787Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.276055Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T03:29:00.289324Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.289984Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.292987Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-05T03:29:00.354275Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.355008Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.358958Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T03:29:00.520444Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.521187Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.524448Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-05T03:29:00.553443Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.554166Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.557990Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T03:29:00.558793Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.559304Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.561842Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-05T03:29:00.623519Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.624312Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.627816Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-05T03:29:00.657183Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.657790Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.661156Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T03:29:00.722308Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.723118Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.726376Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-05T03:29:00.787740Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.787853Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.788469Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.788996Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.792135Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-05T03:29:00.793421Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-05T03:29:00.853471Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.853587Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.854276Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.854721Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.858303Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-05T03:29:00.859353Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-05T03:29:00.919757Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.919866Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.920465Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.920834Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.925019Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-05T03:29:00.925748Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-05T03:29:00.985530Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.985634Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.986203Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.986556Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:29:00.990362Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-05T03:29:01.020325Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.020888Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.023364Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T03:29:01.024125Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-05T03:29:01.024766Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.056781Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.522380Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.522906Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.526106Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-05T03:29:01.587395Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.587492Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.588008Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.590944Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-05T03:29:01.620332Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.784832Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.785393Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:29:01.788993Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-05T03:29:01.850073Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.315513Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.316052Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.319301Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-05T03:29:02.380646Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.545128Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.545621Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.548677Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-05T03:29:02.610478Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.825290Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.825780Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.829384Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-05T03:29:02.890462Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.890771Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.890932Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.891440Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.891799Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.897016Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:29:02.898357Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:29:02.899201Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:29:02.924352Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.924415Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.924629Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.924941Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.928530Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:29:02.929009Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.929361Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:29:02.960719Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.960784Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.960985Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:29:02.963709Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:29:03.024996Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:29:05.494634Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:29:13.750266Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:29:13.750266Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] 
[2026-06-05T03:29:13.750266Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:29:13.750335Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] 
[2026-06-05T03:29:13.750351Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:29:13.750359Z] [nf-36c9450735d513ac9d56dfe668bb6616-3fe4c-zfd7l] [606_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec