File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/aacd859e3676388087946e4fbf2c85/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-05T03:28:40.722048Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-05T03:28:40.722780Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-05T03:28:40.722796Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-05T03:28:40.722803Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-05T03:28:40.722809Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXinLFfU'
[2026-06-05T03:28:40.722815Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-05T03:28:40.722823Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-05T03:28:40.722829Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-05T03:28:40.722834Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-06-05T03:28:40.722840Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-05T03:28:40.722845Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-05T03:28:40.722850Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-05T03:28:40.722855Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-05T03:28:40.722861Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-05T03:28:40.723255Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-05T03:28:40.723383Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-05T03:28:40.730561Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-05T03:28:40.731262Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-05T03:28:40.731408Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-05T03:28:40.731568Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-05T03:28:40.731811Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.732588Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.732701Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.732790Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.733215Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.733308Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.733569Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.733806Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.733989Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.734234Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.734354Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.734551Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.736360Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.736770Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-05T03:28:40.737053Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.737146Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.737282Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.737363Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.737499Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.737574Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.737732Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.737900Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.738165Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.738496Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.738636Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.738715Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.739279Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.739368Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.739568Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.739987Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.740124Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.740207Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.740373Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.740455Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.740595Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.740675Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.740813Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.740891Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.741173Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.741643Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.741794Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.741871Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.742009Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.742090Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.742225Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.742314Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.742454Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.742531Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.742853Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.743332Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.743473Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.743556Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.743692Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.743769Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.743908Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.743986Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.744119Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.744198Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.744329Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.744417Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.744745Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.745300Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.745441Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.745521Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.763042Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.763416Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.763520Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.763684Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.764768Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.764943Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.765088Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.765584Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.765737Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.766033Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.766339Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.768323Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.768644Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.769435Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-05T03:28:40.769704Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.769915Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-05T03:28:40.770432Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.771623Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.772468Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.777298Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T03:28:40.779448Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T03:28:40.782540Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T03:28:40.785581Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T03:28:40.787931Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T03:28:40.791179Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T03:28:40.792193Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T03:28:40.852283Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.853170Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:40.856514Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T03:28:41.418193Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.419101Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:41.421959Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T03:28:42.184555Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.184636Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.185513Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.185867Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.189731Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-05T03:28:42.190930Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T03:28:42.231907Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T03:28:42.250451Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.250533Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.250580Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.251442Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.251844Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.252599Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.255639Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-05T03:28:42.256523Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.257021Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-05T03:28:42.259553Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.261134Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-05T03:28:42.262212Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-05T03:28:42.291716Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.291784Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.292823Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.293151Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.297244Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T03:28:42.298393Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T03:28:42.309253Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.309338Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.310113Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.310460Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.313857Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-05T03:28:42.315031Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T03:28:42.342657Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.343500Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.346679Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T03:28:42.347408Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.348120Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.350792Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T03:28:42.462208Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.462310Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.463110Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.463425Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.467148Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-05T03:28:42.467797Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T03:28:42.528003Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.528870Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.532483Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T03:28:42.545113Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.545907Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.549000Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T03:28:42.660241Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.661076Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.664041Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-05T03:28:42.693108Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.694220Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.697270Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T03:28:42.858672Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.859542Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.862913Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-05T03:28:42.923671Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.924448Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:42.927871Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T03:28:43.038903Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.040147Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.043517Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T03:28:43.104719Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.105871Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.109469Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T03:28:43.170335Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.171466Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.174752Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-05T03:28:43.235900Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.237022Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.240444Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T03:28:43.952870Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.952993Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.954038Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.954559Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:43.958158Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-05T03:28:43.959665Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T03:28:44.018981Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.020383Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.023424Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T03:28:44.385549Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.387167Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.390561Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-05T03:28:44.395220Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.395835Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.399019Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-05T03:28:44.427847Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.428670Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.430765Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.431629Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.431889Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-05T03:28:44.434826Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-05T03:28:44.463865Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.464851Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.467292Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.468206Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T03:28:44.468626Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.471286Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-05T03:28:44.532767Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.534181Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.537700Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T03:28:44.648621Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.649674Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.652504Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-05T03:28:44.713979Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.714929Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.718186Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-05T03:28:44.779233Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.779939Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.782701Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-05T03:28:44.844174Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.844254Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.844854Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.845139Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.848987Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-05T03:28:44.850404Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T03:28:44.861476Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.862026Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.865017Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T03:28:44.893784Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.893844Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.894328Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.894653Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.898256Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-05T03:28:44.910778Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.911279Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.914227Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-05T03:28:44.914865Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.915365Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.918165Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-05T03:28:44.930324Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-05T03:28:44.931098Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.931920Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.932329Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.933106Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.936109Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-05T03:28:44.936812Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T03:28:44.949060Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.949612Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.952616Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T03:28:44.953428Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:44.969130Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.000847Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.001285Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.004383Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-05T03:28:45.065162Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.065221Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.065695Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.068772Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-05T03:28:45.129876Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.344297Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.344823Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.347966Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-05T03:28:45.377012Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.377109Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.377831Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.378247Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.381415Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-05T03:28:45.382542Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.382917Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-05T03:28:45.447029Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.447117Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.455133Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.455863Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.459023Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-05T03:28:45.520003Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.520814Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.521078Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.521449Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.521924Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.526240Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-05T03:28:45.528971Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-05T03:28:45.554322Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-05T03:28:45.586496Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.586589Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.586624Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.587003Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.587502Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.590853Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-05T03:28:45.592027Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-05T03:28:45.652084Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.652183Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.652532Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-05T03:28:45.655285Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-05T03:28:45.684819Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-05T03:28:46.400315Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-05T03:28:51.272925Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-05T03:28:51.272925Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] 
[2026-06-05T03:28:51.272925Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-05T03:28:51.272981Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] 
[2026-06-05T03:28:51.272990Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-05T03:28:51.272997Z] [nf-93aacd859e3676388087946e4fbf2c85-c6b70-hk6rf] [756_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec